ArticleGenetics2006
Sequence conservation of homeologous bacterial artificial chromosomes and transcription of homeologous genes in soybean (Glycine max L. Merr.).
Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
22 citing papers in PubMed, 47 citations in OpenAlex.
- Characterization of theFrontiers in plant science · 2017Article
- A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages.BMC plant biology · 2015Article
- Genome duplication and gene loss affect the evolution of heat shock transcription factor genes in legumes.PloS one · 2014Article
- Phylogeny, structural evolution and functional diversification of the plant PHOSPHATE1 gene family: a focus on Glycine max.BMC evolutionary biology · 2013Article
- Molecular sequence variations of the lipoxygenase-2 gene in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Pericentromeric effects shape the patterns of divergence, retention, and expression of duplicated genes in the paleopolyploid soybean.The Plant cell · 2012Article
- Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.).Molecular breeding : new strategies in plant improvement · 2010Article
- Specific resistances against Pseudomonas syringae effectors AvrB and AvrRpm1 have evolved differently in common bean (Phaseolus vulgaris), soybean (Glycine max), and Arabidopsis thaliana.The New phytologist · 2010Article
- Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris.The Plant cell · 2010Article
- Comparison of homoeolocus organisation in paired BAC clones from white clover (Trifolium repens L.) and microcolinearity with model legume species.BMC plant biology · 2010Article
- Single strand conformation polymorphism based SNP and Indel markers for genetic mapping and synteny analysis of common bean (Phaseolus vulgaris L.).BMC genomics · 2009Article
- Molecular and chromosomal evidence for allopolyploidy in soybean.Plant physiology · 2009Article
- Dynamic rearrangements determine genome organization and useful traits in soybean.Plant physiology · 2009Article
- Adaptive evolution involving gene duplication and insertion of a novel Ty1/copia-like retrotransposon in soybean.Journal of molecular evolution · 2009Article
- The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula.BMC plant biology · 2008Article
- Replication of nonautonomous retroelements in soybean appears to be both recent and common.Plant physiology · 2008Article
- Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.Plant physiology · 2008Article
- Sequence level analysis of recently duplicated regions in soybean [Glycine max (L.) Merr.] genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2008Article
- Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.BMC genomics · 2007Article
- Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize.The Plant cell · 2007Article
Corrections and comments
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The paleopolyploid soybean genome was investigated by sequencing homeologous BAC clones anchored by duplicate N-hydroxycinnamoyl/benzoyltransferase (HCBT) genes. The homeologous BACs were genetically mapped to linkage groups C1 and C2. Annotation of the 173,747- and 98,760-bp BACs showed that gene conservation in both order and orientation is high between homeologous regions with only a single gene insertion/deletion and local tandem duplications differing between the regions. The nucleotide sequence conservation extends into intergenic regions as well, probably due to conserved regulatory sequences. Most of the homeologs appear to have a role in either transcription/DNA binding or cellular signaling, suggesting a potential preference for retention of duplicate genes with these functions. Reverse transcriptase-PCR analysis of homeologs showed that in the tissues sampled, most homeologs have not diverged greatly in their transcription profiles. However, four cases of changes in transcription were identified, primarily in the HCBT gene cluster. Because a mapped locus corresponds to a soybean cyst nematode (SCN) QTL, the potential role of HCBT genes in response to SCN is discussed. These results are the first sequenced-based analysis of homeologous BACs in soybean, a diploidized paleopolyploid.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.