Evidence map›Paper›PMID 16885319›Full record

ArticleApplied and environmental microbiology2006

Development of a dinoflagellate-oriented PCR primer set leads to detection of picoplanktonic dinoflagellates from Long Island Sound.

Senjie Lin, Huan Zhang, Yubo Hou, Lilibeth Miranda, Debashish Bhattacharya

Abstract readEvaluation Study
In one paragraph

Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Molecular characterization of ciliate diversity in stream biofilms.Applied and environmental microbiology · 2008
    Article
  20. Spliced leader RNA trans-splicing in dinoflagellates.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Senjie LinDepartment of Marine Sciences, University of Connecticut, Groton, CT 06340, USA. senjie.lin@uconn.edu
Huan Zhang
Yubo Hou
Lilibeth Miranda
Debashish Bhattacharya

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We developed dinoflagellate-specific 18S rRNA gene primers. PCR amplification using these oligonucleotides for a picoplanktonic DNA sample from Long Island Sound yielded 24 clones, and all but one of these clones were dinoflagellates primarily belonging to undescribed and Amoebophrya-like lineages. These results highlight the need for a systematic investigation of picodinoflagellate diversity in both coastal and oceanic ecosystems.

Indexed as

DNA PrimersAnimalsCloning, MolecularDinoflagellidaDNA, ProtozoanDNA, RibosomalGenes, rRNAMolecular Sequence DataPhylogenyPolymerase Chain ReactionRNA, Ribosomal, 18SSeawaterSequence Analysis, DNADNA PrimersDNA, ProtozoanDNA, RibosomalRNA, Ribosomal, 18S

Identifiers

PMID16885319
PMCPMC1538694

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.