Evidence map›Paper›PMID 16884917›Full record

ReviewMethods (San Diego, Calif.)2006

Analysis of mitogen-activated protein kinase activation and interactions with regulators and substrates.

Lee Bardwell, Kandarp Shah

Open access · greenAbstract readReview
In one paragraph

Review in Methods (San Diego, Calif.), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
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  4. Crystal structure of the phosphorylatedActa biochimica et biophysica Sinica · 2022
    Article
  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Lee BardwellDepartment of Developmental and Cell Biology, University of California, Irvine, CA 92697, USA. bardwell@uci.edu
Kandarp Shah
University of California, Irvine · US

Funding

MAP KINASE CASCADE SIGNAL TRANSMISSION AND SPECIFICITYR01GM060366 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARDWELL, LEE S · 2000 to 2008
$2.2M
A signal transduction pathway database/modeling systemR33GM069013 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MJOLSNESS, ERIC D · 2004 to 2006
$1.7M
A signal transduction pathway database/modeling systemR21GM069013 · NIGMS · UNIVERSITY OF CALIFORNIA IRVINE · PI MJOLSNESS, ERIC D · 2003 to 2003
$157k
NIGMS NIH HHS GM60366NIGMS NIH HHS GM69013NIGMS NIH HHS R01 GM060366NIGMS NIH HHS R21 GM069013NIGMS NIH HHS R33 GM069013
6 · The paper itself

Abstract

Mitogen-activated protein kinase (MAPK) cascades are ubiquitous signal transduction modules in eukaryotes that are of great interest and importance. Here, we summarize some useful methods for the analysis of MAPK signaling, including methods to (1) detect MAPK activation in cells, with an emphasis on using phosphorylation-state-specific antibodies raised against mammalian phosphopeptide sequences to detect the activation of MAPKs in other species; (2) estimate the cellular concentrations of MAPKs and other proteins of interest; (3) detect and quantify the stable physical association of MAPKs with their substrates and regulators, and estimate the relevant dissociation constants; (4) delineate the MAPK-binding regions or domains of MAPK-interacting proteins, with particular emphasis on the identification and verification of MAPK-docking sites. These procedures are broadly applicable to many organisms, including both yeast and mammalian cells.

Indexed as

Amino Acid SequenceAnimalsAntibody SpecificityBinding SitesBuffersCell ExtractsEnzyme ActivationHumansImmunoprecipitationMitogen-Activated Protein KinasesMolecular BiologyMolecular Sequence DataPhosphorylationProteinsBuffersCell ExtractsMitogen-Activated Protein KinasesProteins

Identifiers

PMID16884917
PMCPMC3017500
OpenAlexW1970071313

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.