Evidence map›Paper›PMID 16879979›Full record

ArticleMethods (San Diego, Calif.)2006

Visualizing single molecules interacting with nuclear pore complexes by narrow-field epifluorescence microscopy.

Weidong Yang, Siegfried M Musser

Abstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Clustering within a single-component biomolecular condensate.bioRxiv : the preprint server for biology · 2025
    Article
  2. Article
  3. Article
  4. Time-resolved biophysical approaches to nucleocytoplasmic transport.Computational and structural biotechnology journal · 2017
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Choreography of importin-α/CAS complex assembly and disassembly at nuclear pores.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  11. Self-regulated viscous channel in the nuclear pore complex.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  12. Single-molecule studies of nucleocytoplasmic transport: from one dimension to three dimensions.Integrative biology : quantitative biosciences from nano to macro · 2012
    Review
  13. Single molecule studies of nucleocytoplasmic transport.Biochimica et biophysica acta · 2011
    Review
  14. Article
  15. Review
  16. Single-molecule imaging of nuclear transport.Journal of visualized experiments : JoVE · 2010
    Article
  17. Three-dimensional distribution of transient interactions in the nuclear pore complex obtained from single-molecule snapshots.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  18. Single-molecule measurements of importin alpha/cargo complex dissociation at the nuclear pore.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Weidong YangDepartment of Molecular and Cellular Medicine, The Texas A&M University System Health Science Center, 1114 TAMU, College Station, TX 77843, USA.
Siegfried M Musser

Funding

Single Molecule Analysis of Bacterial Protein TransportR01GM065534 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI MUSSER, SIEGFRIED M · 2003 to 2010
$1.6M
NIGMS NIH HHS GM065534NIGMS NIH HHS R01 GM065534
6 · The paper itself

Abstract

The utility of single molecule fluorescence (SMF) for understanding biological reactions has been amply demonstrated by a diverse series of studies over the last decade. In large part, the molecules of interest have been limited to those within a small focal volume or near a surface to achieve the high sensitivity required for detecting the inherently weak signals arising from individual molecules. Consequently, the investigation of molecular behavior with high time and spatial resolution deep within cells using SMF has remained challenging. Recently, we demonstrated that narrow-field epifluorescence microscopy allows visualization of nucleocytoplasmic transport at the single cargo level. We describe here the methodological approach that yields 2 ms and approximately 15 nm resolution for a stationary particle. The spatial resolution for a mobile particle is inherently worse, and depends on how fast the particle is moving. The signal-to-noise ratio is sufficiently high to directly measure the time a single cargo molecule spends interacting with the nuclear pore complex. Particle tracking analysis revealed that cargo molecules randomly diffuse within the nuclear pore complex, exiting as a result of a single rate-limiting step. We expect that narrow-field epifluorescence microscopy will be useful for elucidating other binding and trafficking events within cells.

Indexed as

Active Transport, Cell NucleusAntigens, Viral, TumorBinding SitesFluorescent DyesGreen Fluorescent ProteinsHeLa CellsHumansMicroscopy, FluorescenceNuclear EnvelopeNuclear PoreRecombinant Fusion ProteinsSimian virus 40Antigens, Viral, TumorFluorescent DyesGreen Fluorescent ProteinsRecombinant Fusion Proteins

Identifiers

PMID16879979
PMCPMC2442885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.