Evidence map›Paper›PMID 16877710›Full record

ArticleProtein science : a publication of the Protein Society2006

Integrin alphaIIbbeta3:ligand interactions are linked to binding-site remodeling.

Roy R Hantgan, Mary C Stahle, John H Connor, David A Horita, Mattia Rocco, Mary A McLane, Sergiy Yakovlev, Leonid Medved

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Visualization of integrin molecules by fluorescence imaging and techniques.Biocell : official journal of the Sociedades Latinoamericanas de Microscopia Electronica ... et. al · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Roy R HantganWake Forest University School of Medicine, Winston-Salem, North Carolina 27157-1019, USA. rhantgan@wfubmc.edu
Mary C Stahle
John H Connor
David A Horita
Mattia Rocco
Mary A McLane
Sergiy Yakovlev
Leonid Medved
Wake Forest University · USUniversity of Maryland, Baltimore · USAlleanza Contro il Cancro · ITUniversity of Delaware · US

Funding

FIBRIN(OGEN) STRUCTURE AND INTERACTIONSR01HL056051 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI LEONID V. MEDVED · 1998 to 2026
$9.1M
NHLBI NIH HHS HL-56051NHLBI NIH HHS R01 HL056051
6 · The paper itself

Abstract

This study tested the hypothesis that high-affinity binding of macromolecular ligands to the alphaIIbbeta3 integrin is tightly coupled to binding-site remodeling, an induced-fit process that shifts a conformational equilibrium from a resting toward an open receptor. Interactions between alphaIIbbeta3 and two model ligands-echistatin, a 6-kDa recombinant protein with an RGD integrin-targeting sequence, and fibrinogen's gamma-module, a 30-kDa recombinant protein with a KQAGDV integrin binding site-were measured by sedimentation velocity, fluorescence anisotropy, and a solid-phase binding assay, and modeled by molecular graphics. Studying echistatin variants (R24A, R24K, D26A, D26E, D27W, D27F), we found that electrostatic contacts with charged residues at the alphaIIb/beta3 interface, rather than nonpolar contacts, perturb the conformation of the resting integrin. Aspartate 26, which interacts with the nearby MIDAS cation, was essential for binding, as D26A and D26E were inactive. In contrast, R24K was fully and R24A partly active, indicating that the positively charged arginine 24 contributes to, but is not required for, integrin recognition. Moreover, we demonstrated that priming--i.e., ectodomain conformational changes and oligomerization induced by incubation at 35 degrees C with the ligand-mimetic peptide cHarGD--promotes complex formation with fibrinogen's gamma-module. We also observed that the gamma-module's flexible carboxy terminus was not required for alphaIIbbeta3 integrin binding. Our studies differentiate priming ligands, which bind to the resting receptor and perturb its conformation, from regulated ligands, where binding-site remodeling must first occur. Echistatin's binding energy is sufficient to rearrange the subunit interface, but regulated ligands like fibrinogen must rely on priming to overcome conformational barriers.

Indexed as

Binding SitesBiotinylationFibrinogenFluorescence PolarizationIntercellular Signaling Peptides and ProteinsLigandsNuclear Magnetic Resonance, BiomolecularPeptide FragmentsPeptidesPeptides, CyclicPlatelet Glycoprotein GPIIb-IIIa ComplexProtein BindingProtein ConformationRecombinant ProteinsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationUltracentrifugationechistatinFibrinogenIntercellular Signaling Peptides and ProteinsLigandslysyl-tyrosyl-glycyl-cysteinyl-homoarginyl-glycyl-aspartyl-tryptophyl-prolyl-cysteine cyclic (4-10)-disulfidePeptide FragmentsPeptidesPeptides, CyclicPlatelet Glycoprotein GPIIb-IIIa ComplexRecombinant Proteins

Identifiers

PMID16877710
PMCPMC2242588
OpenAlexW2094312546

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.