Evidence map›Paper›PMID 16877547›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Identification of IgF, a hinge-region-containing Ig class, and IgD in Xenopus tropicalis.

Yaofeng Zhao, Qiang Pan-Hammarström, Shuyang Yu, Nancy Wertz, Xiaofeng Zhang, Ning Li, John E Butler, Lennart Hammarström

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 111 citations in OpenAlex.

  1. Science advances · 2025
    Article
  2. Review
  3. Review
  4. Characterization of immunoglobulinFrontiers in immunology · 2023
    Article
  5. Article
  6. Review
  7. Review
  8. A cold-blooded view of adaptive immunity.Nature reviews. Immunology · 2018
    Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Microbiota and mucosal immunity in amphibians.Frontiers in immunology · 2015
    Review
  16. Review
  17. Article
  18. Article
  19. Defense genes missing from the flight division.Developmental and comparative immunology · 2013
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Yaofeng ZhaoState Key Laboratory for AgroBiotechnology, China Agricultural University, Beijing 100094, People's Republic of China. yaofeng.zhao@ki.se
Qiang Pan-Hammarström
Shuyang Yu
Nancy Wertz
Xiaofeng Zhang
Ning Li
John E Butler
Lennart Hammarström
Karolinska University Hospital · SEUniversity of Iowa · USChina Agricultural University · CNKarolinska Institutet · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Only three Ig isotypes, IgM, IgX, and IgY, were previously known in amphibians. Here, we describe a heavy-chain isotype in Xenopus tropicalis, IgF (encoded by C(phi)), with only two constant region domains. IgF is similar to amphibian IgY in sequence, but the gene contains a hinge exon, making it the earliest example, in evolution, of an Ig isotype with a separately encoded genetic hinge. We also characterized a gene for the heavy chain of IgD, located immediately 3' of C(mu), that shares features with the C(delta) gene in fish and mammals. The latter gene contains eight constant-region-encoding exons and, unlike the chimeric splicing of muC(H)1 onto the IgD heavy chain in teleost fish, it is expressed as a unique IgD heavy chain. The IgH locus of X. tropicalis shows a 5' V(H)-D(H)-J(H)-C(mu)-C(delta)-C(chi)-C(upsilon)-C(phi) 3' organization, suggesting that the mammalian and amphibian Ig heavy-chain loci share a common ancestor.

Indexed as

AnimalsCatfishesEvolution, MolecularExpressed Sequence TagsGenes, Immunoglobulin Heavy ChainGenomeImmunoglobulin DImmunoglobulin Heavy ChainsImmunoglobulinsModels, GeneticMolecular Sequence DataPhylogenySequence Analysis, DNAXenopusIgYImmunoglobulin DImmunoglobulin Heavy ChainsImmunoglobulins

Identifiers

PMID16877547
PMCPMC1567701
OpenAlexW2051374072

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.