Evidence map›Paper›PMID 16877303›Full record

ArticleJournal of neurovirology2006

Transcriptional activity of blood-and cerebrospinal fluid-derived nef/long-terminal repeat sequences isolated from a slow progressor infected with nef-deleted human immunodeficiency virus type 1 (HIV-1) who developed HIV-associated dementia.

Melissa J Churchill, Anna Figueiredo, Daniel Cowley, Lachlan Gray, Damian Fj Purcell, John S Sullivan, Dale A McPhee, Steven L Wesselingh, Bruce J Brew, Paul R Gorry

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of neurovirology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.1field-weighted citation impact, top 60% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Electro-Magnetic Nano-Particle Bound Beclin1 siRNA Crosses the Blood-Brain Barrier to Attenuate the Inflammatory Effects of HIV-1 Infection in Vitro.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2017
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Melissa J ChurchillThe Macfarlane Burnet Institute for Medical Research and Public Health, Melbourne, Victoria, Australia.
Anna Figueiredo
Daniel Cowley
Lachlan Gray
Damian Fj Purcell
John S Sullivan
Dale A McPhee
Steven L Wesselingh
Bruce J Brew
Paul R Gorry
Burnet Institute · AUMonash University · AUAustralian Red Cross Lifeblood · AUSt Vincent's Hospital Sydney · AUUniversity of Melbourne · AU

Funding

Pathogenesis of Macrophage Tropic HIV-1R21AI054207 · NIAID · MACFARLANE BURNET INST FOR RES/PUB HLTH · PI GORRY, PAUL R · 2003 to 2004
$324k
NIAID NIH HHS R21-AI054207
6 · The paper itself

Abstract

The authors studied the transcriptional activity of blood-and cerebrospinal fluid (CSF)-derived nef/long-terminal repeat (LTR) sequences isolated from a slow progressor infected with nef-deleted human immunodeficiency virus type 1 (HIV-1) who developed HIV-associated dementia (HIVD). The transcriptional activity of CSF-derived nef/LTR clones isolated during HIVD was up to 4.5-fold higher than blood-derived clones isolated before and during HIVD when tested under basal, phorbol 12-myristate 13-acetate-(PMA-), and Tat-activated conditions, and was associated with the presence of duplicated nuclear factor (NF)-kappaB and specificity factor-1 (Sp-1) binding sites coupled with a truncated nef sequence, increased replication capacity, and high CSF viral load. Thus, nef and LTR mutations that augment transcription may contribute to neuropathogenesis of nef-deleted HIV-1.

Indexed as

Transcriptional ActivationAIDS Dementia ComplexGene DeletionGene Expression Regulation, ViralGene Products, nefGene Products, tatHIV-1HIV Long Terminal RepeatHumansnef Gene Products, Human Immunodeficiency Virustat Gene Products, Human Immunodeficiency VirusViral LoadVirulenceGene Products, nefGene Products, tatnef Gene Products, Human Immunodeficiency Virustat Gene Products, Human Immunodeficiency Virus

Identifiers

PMID16877303
OpenAlexW2045859032

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.