Evidence map›Paper›PMID 16874306›Full record

ArticleThe EMBO journal2006

Endogenous phosphatidylcholine and a long spacer ligand stabilize the lipid-binding groove of CD1b.

Luis F Garcia-Alles, Kees Versluis, Laurent Maveyraud, Ana Tesouro Vallina, Sebastiano Sansano, Nana Fatimath Bello, Hans-Jürgen Gober, Valérie Guillet, Henri de la Salle, Germain Puzo and 4 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 76 citations in OpenAlex.

  1. Trial
  2. Review
  3. Insights into the CD1 lipidome.Frontiers in immunology · 2024
    Article
  4. Novel Molecular Insights into Human Lipid-Mediated T Cell Immunity.International journal of molecular sciences · 2021
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Molecular recognition of microbial lipid-based antigens by T cells.Cellular and molecular life sciences : CMLS · 2018
    Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Human autoreactive T cells recognize CD1b and phospholipids.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  17. Lipid and small-molecule display by CD1 and MR1.Nature reviews. Immunology · 2015
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Luis F Garcia-AllesCNRS, UMR5089, Département Mécanismes Moléculaires des Infections Mycobactériennes, Institut de Pharmacologie et de Biologie Structurale, Toulouse, France. Luis-Fernando.Garcia-Alles@ipbs.fr
Kees Versluis
Laurent Maveyraud
Ana Tesouro Vallina
Sebastiano Sansano
Nana Fatimath Bello
Hans-Jürgen Gober
Valérie Guillet
Henri de la Salle
Germain Puzo
Lucia Mori
Albert J R Heck
Gennaro De Libero
Lionel Mourey
Centre National de la Recherche Scientifique · FRUniversity Hospital of Basel · CHInstitut de Pharmacologie et de Biologie Structurale · FRUtrecht University · NLEurométropole de Strasbourg · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CD1 proteins present lipid antigens to T cells. The antigens are acquired in the endosomal compartments. This raises the question of how the large hydrophobic CD1 pockets are preserved between the moment of biosynthesis in the endoplasmic reticulum and arrival to the endosomes. To address this issue, the natural ligands associated with a soluble form of human CD1b have been investigated. Using isoelectric focusing, native mass spectrometry and resolving the crystal structure at 1.8 A resolution, we found that human CD1b is simultaneously associated with endogenous phosphatidylcholine (PC) and a 41-44 carbon atoms-long spacer molecule. The two lipids appear to work in concert to stabilize the CD1b groove, their combined size slightly exceeding the maximal groove capacity. We propose that the spacer serves to prevent binding of ligands with long lipid tails, whereas short-chain lipids might still displace the PC, which is exposed at the groove entrance. The data presented herein explain how the CD1b groove is preserved, and provide a rationale for the in vivo antigen-binding properties of CD1b.

Indexed as

Antigens, CD1Binding SitesCrystallography, X-RayHumansHydrophobic and Hydrophilic InteractionsIsoelectric FocusingLigandsMass SpectrometryModels, MolecularPhosphatidylcholinesProtein BindingProtein ConformationProtein FoldingAntigens, CD1CD1b antigenLigandsPhosphatidylcholines

Identifiers

PMID16874306
PMCPMC1538567
OpenAlexW2120832265

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.