Evidence map›Paper›PMID 16874038›Full record

ArticleAutophagy2005

Trs85 is required for macroautophagy, pexophagy and cytoplasm to vacuole targeting in Yarrowia lipolytica and Saccharomyces cerevisiae.

Taras Y Nazarko, Ju Huang, Jean-Marc Nicaud, Daniel J Klionsky, Andrei A Sibirny

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 3 pooled it
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 3 syntheses or guidelines pooled it, 71 citations in OpenAlex.

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  17. TRAPP Complexes in Secretion and Autophagy.Frontiers in cell and developmental biology · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Taras Y NazarkoInstitute of Cell Biology, National Academy of Sciences of Ukraine, Lviv, Ukraine.
Ju Huang
Jean-Marc Nicaud
Daniel J Klionsky
Andrei A Sibirny
Institute of Cell Biology · UA

Funding

ALTERNATIVE VACUOLAR TARGETING MECHANISMS IN YEASTR01GM053396 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KLIONSKY, DANIEL J. · 1995 to 2018
$12.1M
NIGMS NIH HHS GM53396NIGMS NIH HHS R01 GM053396
6 · The paper itself

Abstract

Yarrowia lipolytica was recently introduced as a new model organism to study peroxisome degradation in yeasts. Transfer of Y. lipolytica cells from oleate/ethylamine to glucose/ammonium chloride medium leads to selective macroautophagy of peroxisomes. To decipher the molecular mechanisms of macropexophagy we isolated mutants of Y. lipolytica defective in the inactivation of peroxisomal enzymes under pexophagy conditions. Through this analysis we identified the gene YlTRS85, the ortholog of Saccharomyces cerevisiae TRS85 that encodes the 85 kDa subunit of transport protein particle (TRAPP). A parallel genetic screen in S. cerevisiae also identified the trs85 mutant. Here, we report that Trs85 is required for nonspecific autophagy, pexophagy and the cytoplasm to vacuole targeting pathway in both yeasts.

Indexed as

AutophagyAminopeptidasesAutophagy-Related Protein 8 FamilyCloning, MolecularCytoplasmFungal ProteinsGene Expression Regulation, FungalMembrane ProteinsMicrotubule-Associated ProteinsMutationPeroxisomesProtein SubunitsProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionAminopeptidasesAPE1 protein, S cerevisiaeATG8 protein, S cerevisiaeAutophagy-Related Protein 8 FamilyFungal ProteinsMembrane ProteinsMicrotubule-Associated ProteinsProtein SubunitsSaccharomyces cerevisiae Proteinstransport protein particle, TRAPPVesicular Transport Proteins

Identifiers

PMID16874038
PMCPMC1828867
OpenAlexW21038192

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.