Evidence map›Paper›PMID 16872840›Full record

ArticleJournal of the American Society for Mass Spectrometry2006

Identification of the adduct between a 4-Aza-3-ene-1,6-diyne and DNA using electrospray ionization mass spectrometry.

Courtney L Sherman, Sarah E Pierce, Jennifer S Brodbelt, Bodin Tuesuwan, Sean M Kerwin

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Courtney L ShermanDepartment of Chemistry and Biochemistry, University of Texas, 1 University Station A5300, 78712, Austin, TX, USA.
Sarah E PierceDepartment of Chemistry and Biochemistry, University of Texas, 1 University Station A5300, 78712, Austin, TX, USA.
Jennifer S BrodbeltDepartment of Chemistry and Biochemistry, University of Texas, 1 University Station A5300, 78712, Austin, TX, USA. jbrodbelt@mail.utexas.edu.
Bodin TuesuwanDivision of Medicinal Chemistry, College of Pharmacy, University of Texas at Austin, Austin, Texas, USA.
Sean M KerwinDivision of Medicinal Chemistry, College of Pharmacy, University of Texas at Austin, Austin, Texas, USA.
The University of Texas at Austin · US

Funding

Design and Characterization of DNA Interactive AgentsR01GM065956 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI BRODBELT, JENNIFER S. · 2003 to 2011
$2.1M
NIGMS NIH HHS R01 GM65956
6 · The paper itself

Abstract

The interactions between a novel enediyne [1-methyl-2-(phenylethynyl)-3-(3-phenylprop-2-ynyl)-3H-benzimidazolium] (1) and various cytosine-containing oligonucleotides were studied using electrospray ionization mass spectrometry (ESI-MS) in a flow injection analysis mode useful for small volumes. This enediyne ligand, developed as a potential alternative to the highly cytotoxic natural enediynes, some of which have been successfully used as anti-tumor agents, has previously been shown to interact with DNA through frank strand scission as well as via the formation of adducts that lead to 2'-deoxycytidine-specific cleavage. Through ESI-MS, the structures of these adducts were examined and a sequence dependence of the 2'-deoxycytidine-specific cleavage was noted. Collisionally activated dissociation of the observed adducts confirmed the strength of the interactions between the enediyne and DNA and supports a direct linkage between the enediyne and the cytosine nucleobase, likely the result of a nucleophilic attack of the phenylethynyl group by the cytosine amine.

Indexed as

AlkynesBenzimidazolesDNA AdductsElectrophoresis, Polyacrylamide GelIndicators and ReagentsOligonucleotidesPiperidinesSpectrometry, Mass, Electrospray IonizationTandem Mass Spectrometry1-methyl-2-(phenylethynyl)-3-(3-phenylprop-2-ynyl)-3H-benzimidazoliumAlkynesBenzimidazolesDNA AdductsIndicators and ReagentsOligonucleotidesPiperidines

Identifiers

PMID16872840
OpenAlexW2040257398

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.