ArticleBMC genomics2006
Generation, annotation and analysis of ESTs from Trichoderma harzianum CECT 2413.
Article in BMC genomics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed, 70 citations in OpenAlex.
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- Cloning, annotation and expression analysis of mycoparasitism-related genes in Trichoderma harzianum 88.Journal of microbiology (Seoul, Korea) · 2013Article
- Transcriptional profiling of ESTs from the biocontrol fungus Chaetomium cupreum.TheScientificWorldJournal · 2012Article
- Identification of mycoparasitism-related genes in Trichoderma atroviride.Applied and environmental microbiology · 2011Article
- Functional analysis of the Trichoderma harzianum nox1 gene, encoding an NADPH oxidase, relates production of reactive oxygen species to specific biocontrol activity against Pythium ultimum.Applied and environmental microbiology · 2011Article
- Development of expressed sequence tags from the pearl oyster, Pinctada martensii Dunker.Marine biotechnology (New York, N.Y.) · 2011Article
- mRNA/microRNA Profile at the Metamorphic Stage of Olive Flounder (Paralichthys olivaceus).Comparative and functional genomics · 2011Article
- Expressed sequence tags-based identification of genes in a biocontrol strain Trichoderma asperellum.Molecular biology reports · 2010Article
- TvDim1 of Trichoderma virens is involved in redox-processes and confers resistance to oxidative stresses.Current genetics · 2010Article
- Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey.BMC genomics · 2009Article
- Gene expression analysis of the biocontrol fungus Trichoderma harzianum in the presence of tomato plants, chitin, or glucose using a high-density oligonucleotide microarray.BMC microbiology · 2009Article
- Expressed sequence tags from the flower pathogen Claviceps purpurea.Molecular plant pathology · 2009Article
- Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1.BMC genomics · 2009Article
- Identification of potential marker genes for Trichoderma harzianum strains with high antagonistic potential against Rhizoctonia solani by a rapid subtraction hybridization approach.Current genetics · 2009Article
- Cloning and characterization of the Thcut1 gene encoding a cutinase of Trichoderma harzianum T34.Current genetics · 2008Article
- Isolation of mycoparasitic-related transcripts by SSH during interaction of the mycoparasite Stachybotrys elegans with its host Rhizoctonia solani.Current genetics · 2008Article
- Purifying selection and birth-and-death evolution in the class II hydrophobin gene families of the ascomycete Trichoderma/Hypocrea.BMC evolutionary biology · 2008Article
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Authors and funding
11 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe filamentous fungus Trichoderma harzianum is used as biological control agent of several plant-pathogenic fungi. In order to study the genome of this fungus, a functional genomics project called "TrichoEST" was developed to give insights into genes involved in biological control activities using an approach based on the generation of expressed sequence tags (ESTs).
resultsEight different cDNA libraries from T. harzianum strain CECT 2413 were constructed. Different growth conditions involving mainly different nutrient conditions and/or stresses were used. We here present the analysis of the 8,710 ESTs generated. A total of 3,478 unique sequences were identified of which 81.4% had sequence similarity with GenBank entries, using the BLASTX algorithm. Using the Gene Ontology hierarchy, we performed the annotation of 51.1% of the unique sequences and compared its distribution among the gene libraries. Additionally, the InterProScan algorithm was used in order to further characterize the sequences. The identification of the putatively secreted proteins was also carried out. Later, based on the EST abundance, we examined the highly expressed genes and a hydrophobin was identified as the gene expressed at the highest level. We compared our collection of ESTs with the previous collections obtained from Trichoderma species and we also compared our sequence set with different complete eukaryotic genomes from several animals, plants and fungi. Accordingly, the presence of similar sequences in different kingdoms was also studied.
conclusionThis EST collection and its annotation provide a significant resource for basic and applied research on T. harzianum, a fungus with a high biotechnological interest.
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