Evidence map›Paper›PMID 16872513›Full record

ArticleBMC developmental biology2006

Increased large conductance calcium-activated potassium (BK) channel expression accompanied by STREX variant downregulation in the developing mouse CNS.

Stephen H-F MacDonald, Peter Ruth, Hans-Guenther Knaus, Michael J Shipston

Abstract readComparative Study
In one paragraph

Article in BMC developmental biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. American journal of physiology. Renal physiology · 2024
    Article
  3. Large conductance voltage-and calcium-activated KFrontiers in pharmacology · 2024
    Review
  4. Novel Thioxothiazolo[3,4-ACS medicinal chemistry letters · 2022
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. BK Channels in the Central Nervous System.International review of neurobiology · 2016
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Intragenic alternative splicing coordination is essential for Caenorhabditis elegans slo-1 gene function.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  17. Alternatively spliced domains interact to regulate BK potassium channel gating.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  18. Article
  19. Article
  20. Intron retention facilitates splice variant diversity in calcium-activated big potassium channel populations.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Stephen H-F MacDonaldCentre for Integrative Physiology, School of Biomedical Science, Hugh Robson Building, University of Edinburgh, Edinburgh, Scotland, EH8 9XD, UK. macdonas@tcd.ie
Peter Ruth
Hans-Guenther Knaus
Michael J Shipston

Funding

Wellcome Trust 067683
6 · The paper itself

Abstract

backgroundLarge conductance calcium- and voltage activated potassium (BK) channels are important determinants of neuronal excitability through effects on action potential duration, frequency and synaptic efficacy. The pore- forming subunits are encoded by a single gene, KCNMA1, which undergoes extensive alternative pre mRNA splicing. Different splice variants can confer distinct properties on BK channels. For example, insertion of the 58 amino acid stress-regulated exon (STREX) insert, that is conserved throughout vertebrate evolution, encodes channels with distinct calcium sensitivity and regulation by diverse signalling pathways compared to the insertless (ZERO) variant. Thus, expression of distinct splice variants may allow cells to differentially shape their electrical properties during development. However, whether differential splicing of BK channel variants occurs during development of the mammalian CNS has not been examined.

resultsUsing quantitative real-time polymerase chain reaction (RT-PCR) Taqmantrade mark assays, we demonstrate that total BK channel transcripts are up regulated throughout the murine CNS during embryonic and postnatal development with regional variation in transcript levels. This upregulation is associated with a decrease in STREX variant mRNA expression and an upregulation in ZERO variant expression.

conclusionAs BK channel splice variants encode channels with distinct functional properties the switch in splicing from the STREX phenotype to ZERO phenotype during embryonic and postnatal CNS development may provide a mechanism to allow BK channels to control distinct functions at different times of mammalian brain development.

Indexed as

Alternative SplicingAnimalsAnimals, NewbornBrainCentral Nervous SystemDown-RegulationExonsGene Expression Regulation, DevelopmentalGenetic VariationLarge-Conductance Calcium-Activated Potassium ChannelsMiceMice, Inbred C57BLRNA, MessengerSpinal CordLarge-Conductance Calcium-Activated Potassium ChannelsRNA, Messenger

Identifiers

PMID16872513
PMCPMC1562363

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.