Evidence map›Paper›PMID 16872273›Full record

ArticleThe Biochemical journal2006

A critical beta6-beta7 loop in the pleckstrin homology domain of ceramide kinase.

Philipp Rovina, Markus Jaritz, Siegfried Höfinger, Christine Graf, Piroska Dévay, Andreas Billich, Thomas Baumruker, Frédéric Bornancin

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. A lipid binding domain in sphingosine kinase 2.Biochemical and biophysical research communications · 2009
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Philipp RovinaNovartis Institutes for BioMedical Research, Brunnerstrasse 59, A-1235 Vienna, Austria.
Markus Jaritz
Siegfried Höfinger
Christine Graf
Piroska Dévay
Andreas Billich
Thomas Baumruker
Frédéric Bornancin
Novartis (Austria) · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CerK (ceramide kinase) produces ceramide 1-phosphate, a sphingophospholipid with recognized signalling properties. It localizes to the Golgi complex and fractionates essentially between detergent-soluble and -insoluble fractions; however, the determinants are unknown. Here, we made a detailed mutagenesis study of the N-terminal PH domain (pleckstrin homology domain) of CerK, based on modelling, and identified key positively charged amino acid residues within an unusual motif in the loop interconnecting beta-strands 6 and 7. These residues are critical for CerK membrane association and polyphosphoinositide binding and activity. Their mutagenesis results in increased thermolability, sensitivity to proteolysis, reduced apparent molecular mass as well as propensity of the recombinant mutant protein to aggregate, indicating that this loop impacts the overall conformation of the CerK protein. This is in contrast with most PH domains whose function strongly relies on charges located in the beta1-beta2 loop.

Indexed as

Amino Acid SequenceAnimalsBlood ProteinsChlorocebus aethiopsConserved SequenceCOS CellsGolgi ApparatusHumansKineticsModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedMutationPhosphoproteinsPhosphotransferases (Alcohol Group Acceptor)Protein ConformationBlood Proteinsceramide kinasePhosphoproteinsPhosphotransferases (Alcohol Group Acceptor)platelet protein P47

Identifiers

PMID16872273
PMCPMC1652822
OpenAlexW2004394732

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.