Evidence map›Paper›PMID 16871394›Full record

ArticleMolecular genetics and genomics : MGG2006

Loc1p is required for efficient assembly and nuclear export of the 60S ribosomal subunit.

Carl R Urbinati, Graydon B Gonsalvez, John P Aris, Roy M Long

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Role of Loc1p in assembly and reorganization of nuclear ASH1 messenger ribonucleoprotein particles in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  8. Review
  9. Principles of mRNA transport in yeast.Cellular and molecular life sciences : CMLS · 2012
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. mRNA trafficking in fungi.Molecular genetics and genomics : MGG · 2007
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Carl R UrbinatiDepartment of Microbiology and Molecular Genetics, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA.
Graydon B Gonsalvez
John P Aris
Roy M Long
Medical College of Wisconsin · USUniversity of Florida · US

Funding

RNA LOCALIZATION IN S.CEREVISIAER01GM060392 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI LONG, ROY M · 2000 to 2004
$1.1M
NUCLEOLAR FUNCTION AND CELL GROWTH IN YEASTR01GM048586 · NIGMS · UNIVERSITY OF FLORIDA · PI ARIS, JOHN P · 1994 to 1998
–
NIGMS NIH HHS R01 GM048586NIGMS NIH HHS R01 GM060392
6 · The paper itself

Abstract

Loc1p is an exclusively nuclear dsRNA-binding protein that affects the asymmetric sorting of ASH1 mRNA to daughter cells in Saccharomyces cerevisiae. In addition to the role in cytoplasmic RNA localization, Loc1p is a constituent of pre-60S ribosomes. Cells devoid of Loc1p display a defect in the synthesis of 60S ribosomal subunits, resulting in "half-mer" polyribosomes. Previously, we reported that Loc1p is located throughout the entire nucleus; however, upon closer inspection we discovered that Loc1p is enriched in the nucleolus consistent with a role in 60S ribosome biogenesis. Given that Loc1p is an RNA-binding protein and presumably functions in the assembly of 60S ribosomal subunits, we investigated if Loc1p has a role in rRNA processing and nuclear export of 60S subunits. Analysis of pre-rRNA processing revealed that loc1Delta cells exhibit gross defects in 25S rRNA synthesis, specifically a delay in processing at sites A0, A1 and A2 in 35S pre-rRNA. Furthermore, loc1Delta cells exhibit nuclear export defects for 60S ribosomal subunits, again, consistent with a role for Loc1p in the assembly of 60S ribosomal subunits. It is attractive to hypothesize that the two phenotypes associated with loc1Delta cells, namely altered ASH1 mRNA localization and ribosome biogenesis, are not mutually exclusive, but that ribosome biogenesis directly impacts mRNA localization.

Indexed as

Active Transport, Cell NucleusBase SequenceDNA-Binding ProteinsDNA, FungalMutationNuclear ProteinsRepressor ProteinsRibosomesRNA-Binding ProteinsRNA, FungalRNA PrecursorsRNA Processing, Post-TranscriptionalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsASH1 protein, S cerevisiaeDNA-Binding ProteinsDNA, FungalLOC1 protein, S cerevisiaeNuclear ProteinsRepressor ProteinsRNA-Binding ProteinsRNA, FungalRNA PrecursorsSaccharomyces cerevisiae Proteins

Identifiers

PMID16871394
OpenAlexW2084053960

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.