ArticleNucleic acids research2006
Nearest neighbor parameters for Watson-Crick complementary heteroduplexes formed between 2'-O-methyl RNA and RNA oligonucleotides.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- NUPACK: Computational Nucleic Acid Analysis and Design.ACS synthetic biology · 2026Article
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- Exploring the challenges of RNAi-based strategies for crop protection.Advanced biotechnology · 2024Review
- Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3'-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides.RNA (New York, N.Y.) · 2022Article
- Secondary structure prediction for RNA sequences including NNature communications · 2022Article
- An artificial cationic oligosaccharide combined with phosphorothioate linkages strongly improves siRNA stability.Scientific reports · 2020Article
- RNA Secondary Structure Motifs of the Influenza A Virus as Targets for siRNA-Mediated RNA Interference.Molecular therapy. Nucleic acids · 2020Article
- Simulation-guided DNA probe design for consistently ultraspecific hybridization.Nature chemistry · 2015Article
- Microarrays for identifying binding sites and probing structure of RNAs.Nucleic acids research · 2015Review
- Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides.Nucleic acids research · 2013Article
- Article
- Stability and mismatch discrimination of locked nucleic acid-DNA duplexes.Biochemistry · 2011Article
- Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes.Biochemistry · 2011Article
- Thermodynamics of RNA duplexes modified with unlocked nucleic acid nucleotides.Nucleic acids research · 2010Article
- Linear relationship between deformability and thermal stability of 2'-O-modified RNA hetero duplexes.The journal of physical chemistry. B · 2010Article
- Contributions of stacking, preorganization, and hydrogen bonding to the thermodynamic stability of duplexes between RNA and 2'-O-methyl RNA with locked nucleic acids.Biochemistry · 2009Article
- NMR-assisted prediction of RNA secondary structure: identification of a probable pseudoknot in the coding region of an R2 retrotransposon.Journal of the American Chemical Society · 2008Article
- Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function.Nucleic acids research · 2008Article
- Selective quenching of fluorescence from unbound oligonucleotides by gold nanoparticles as a probe of RNA structure.RNA (New York, N.Y.) · 2007Article
- A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of 2'-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the thermodynamic properties of 2'-O-methyl RNA/RNA heteroduplexes.Nucleic acids research · 2007Article
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5 authors.
Funding
Abstract
Results from optical melting studies of Watson-Crick complementary heteroduplexes formed between 2'-O-methyl RNA and RNA oligonucleotides are used to determine nearest neighbor thermodynamic parameters for predicting the stabilities of such duplexes. The results are consistent with the physical model assumed by the individual nearest neighbor-hydrogen bonding model, which contains terms for helix initiation, base pair stacking and base pair composition. The sequence dependence is similar to that for Watson-Crick complementary RNA/RNA duplexes, which suggests that the sequence dependence may also be similar to that for other backbones that favor A-form RNA conformations.
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