Evidence map›Paper›PMID 16864776›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Structural basis for the design of potent and species-specific inhibitors of 3-hydroxy-3-methylglutaryl CoA synthases.

Florence Pojer, Jean-Luc Ferrer, Stéphane B Richard, Dinesh A Nagegowda, Mee-Len Chye, Thomas J Bach, Joseph P Noel

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  9. Anatomy of the β-branching enzyme of polyketide biosynthesis and its interaction with an acyl-ACP substrate.Proceedings of the National Academy of Sciences of the United States of America · 2016
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  18. Enzymes of the mevalonate pathway of isoprenoid biosynthesis.Archives of biochemistry and biophysics · 2011
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Florence PojerHoward Hughes Medical Institute, The Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Jean-Luc Ferrer
Stéphane B Richard
Dinesh A Nagegowda
Mee-Len Chye
Thomas J Bach
Joseph P Noel

Funding

Structural Basis for Isoprenoid BiosynthesisR01AI051438 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI NOEL, JOSEPH PATRICK · 2002 to 2006
$1.8M
Howard Hughes Medical InstituteNIAID NIH HHS AI41538NIAID NIH HHS R01 AI051438
6 · The paper itself

Abstract

3-Hydroxy-3-methylglutaryl CoA synthase (HMGS) catalyzes the first committed step in the mevalonate metabolic pathway for isoprenoid biosynthesis and serves as an alternative target for cholesterol-lowering and antibiotic drugs. We have determined a previously undescribed crystal structure of a eukaryotic HMGS bound covalently to a potent and specific inhibitor F-244 [(E,E)-11-[3-(hydroxymethyl)-4-oxo-2-oxytanyl]-3,5,7-trimethyl-2,4-undecadienenoic acid]. Given the accessibility of synthetic analogs of the F-244 natural product, this inhibited eukaryotic HMGS structure serves as a necessary starting point for structure-based methods that may improve the potency and species-specific selectivity of the next generation of F-244 analogs designed to target particular eukaryotic and prokaryotic HMGS.

Indexed as

Enzyme InhibitorsFatty Acids, UnsaturatedLactonesProtein Structure, TertiaryBinding SitesCrystallography, X-RayHumansHydroxymethylglutaryl-CoA SynthaseModels, MolecularMolecular Sequence DataMustard PlantPlant ProteinsStructure-Activity Relationshipantibiotic 1233AEnzyme InhibitorsFatty Acids, UnsaturatedHydroxymethylglutaryl-CoA SynthaseLactonesPlant Proteins

Identifiers

PMID16864776
PMCPMC1544197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.