Evidence map›Paper›PMID 16864769›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

The role of the proline-rich domain of Ssdp1 in the modular architecture of the vertebrate head organizer.

Badam Enkhmandakh, Alexandr V Makeyev, Dashzeveg Bayarsaihan

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

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  5. Crystal structure of human LDB1 in complex with SSBP2.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Badam EnkhmandakhDepartment of Molecular, Cellular, and Craniofacial Biology, Birth Defects Center, University of Louisville, Louisville, KY 40292, USA.
Alexandr V Makeyev
Dashzeveg Bayarsaihan
University of Louisville · USColumbia University · US

Funding

U-SHAPED DEVELOPMENT IN INFANT COGNITION AND PERCEPTIONP20RR017702 · NCRR · UNIVERSITY OF LOUISVILLE · PI PISANO, M. MICHELE · 2002 to 2011
$15.0M
NCRR NIH HHS 5 P20 RR17702-04NCRR NIH HHS P20 RR017702
6 · The paper itself

Abstract

Lim1, Ssdp1, and Ldb1 proteins are components of the Ldb1-associated transcriptional complex, which is important in the head-organizing activity during early mouse development. Depletion of each individual protein alone causes a headless phenotype. To explore in more detail the modular architecture of the complex, we have generated two different gene-trapped mouse lines that express truncated forms of Ssdp1. Embryos derived from the gene-trapped line that encodes a truncated Ssdp1 lacking the proline-rich sequence exhibit a lethal abnormal head-development phenotype, resembling mouse embryos deficient for Lim1, Ssdp1, or Otx2 genes. Embryos derived from the second gene-trapped line, in which most of the proline-rich domain of Ssdp1 is retained, did not show abnormalities in head development. Our data demonstrate that components of the Ldb1-dependent module can be subdivided further into discrete functional domains and that the proline-rich stretch of Ssdp1 is critical for embryonic head development. Furthermore, phylogenetic comparisons revealed that in Caenorhabditis elegans, a similar proline-rich sequence is absent in Ssdp but present in Ldb1. We conclude that although the overall architecture of the Ldb1-dependent module has been preserved, the genetic specification of its individual components has diversified during evolution, without compromising the function of the module.

Indexed as

Embryo, NonmammalianHeadOrganizers, EmbryonicAmino Acid SequenceAnimalsBody PatterningCaenorhabditis elegansDNA-Binding ProteinsEmbryo, MammalianHomeodomain ProteinsHumansLIM Domain ProteinsLIM-Homeodomain ProteinsMacromolecular SubstancesMiceMolecular Sequence DataDNA-Binding ProteinsHomeodomain ProteinsLdb1 protein, mouseLhx1 protein, mouseLIM Domain ProteinsLIM-Homeodomain ProteinsMacromolecular SubstancesProlineSsbp3 protein, mouseTranscription Factors

Identifiers

PMID16864769
PMCPMC1544221
OpenAlexW2029574834

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.