ArticleGenome biology2006
yrGATE: a web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes.
Article in Genome biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
13 citing papers in PubMed.
- Double triage to identify poorly annotated genes in maize: The missing link in community curation.PloS one · 2019Article
- GeneValidator: identify problems with protein-coding gene predictions.Bioinformatics (Oxford, England) · 2016Article
- xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud.The Plant cell · 2016Article
- Extensive error in the number of genes inferred from draft genome assemblies.PLoS computational biology · 2014Article
- ORCAE: online resource for community annotation of eukaryotes.Nature methods · 2012Article
- Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize.PloS one · 2011Article
- MaizeGDB: curation and outreach go hand-in-hand.Database : the journal of biological databases and curation · 2011Article
- MaizeGDB becomes 'sequence-centric'.Database : the journal of biological databases and curation · 2009Article
- PlantGDB: a resource for comparative plant genomics.Nucleic acids research · 2008Article
- EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome.BMC genomics · 2007Article
- Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.BMC genomics · 2007Article
- Manual curation is not sufficient for annotation of genomic databases.Bioinformatics (Oxford, England) · 2007Article
- xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features.Genome biology · 2006Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Your Gene structure Annotation Tool for Eukaryotes (yrGATE) provides an Annotation Tool and Community Utilities for worldwide web-based community genome and gene annotation. Annotators can evaluate gene structure evidence derived from multiple sources to create gene structure annotations. Administrators regulate the acceptance of annotations into published gene sets. yrGATE is designed to facilitate rapid and accurate annotation of emerging genomes as well as to confirm, refine, or correct currently published annotations. yrGATE is highly portable and supports different standard input and output formats. The yrGATE software and usage cases are available at http://www.plantgdb.org/prj/yrGATE.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.