Evidence map›Paper›PMID 16855283›Full record

ArticleNucleic acids research2006

Chromosome-wide identification of novel imprinted genes using microarrays and uniparental disomies.

Reiner Schulz, Trevelyan R Menheniott, Kathryn Woodfine, Andrew J Wood, Jonathan D Choi, Rebecca J Oakey

Abstract readValidation Study
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
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  7. Reports of biochemistry & molecular biology · 2020
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  19. A survey of tissue-specific genomic imprinting in mammals.Molecular genetics and genomics : MGG · 2012
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Reiner SchulzKing's College London, School of Medicine at Guy's, King's College and St. Thomas' Hospitals, Department of Medical and Molecular Genetics, 8th Floor Guy's Tower, London SE1 9RT, UK.
Trevelyan R Menheniott
Kathryn Woodfine
Andrew J Wood
Jonathan D Choi
Rebecca J Oakey

Funding

CLONING IMPRINTED GENES FROM THE MOUSER01GM058759 · NIGMS · CHILDREN'S HOSPITAL OF PHILADELPHIA · PI EMANUEL, BEVERLY S · 1999 to 2003
$1.1M
NIGMS NIH HHS GM58759Wellcome Trust 071002
6 · The paper itself

Abstract

Genomic imprinting refers to a specialized form of epigenetic gene regulation whereby the expression of a given allele is dictated by parental origin. Defining the extent and distribution of imprinting across genomes will be crucial for understanding the roles played by imprinting in normal mammalian growth and development. Using mice carrying uniparental disomies or duplications, microarray screening and stringent bioinformatics, we have developed the first large-scale tissue-specific screen for imprinted gene detection. We quantify the stringency of our methodology and relate it to previous non-tissue-specific large-scale studies. We report the identification in mouse of four brain-specific novel paternally expressed transcripts and an additional three genes that show maternal expression in the placenta. The regions of conserved linkage in the human genome are associated with the Prader-Willi Syndrome (PWS) and Beckwith-Wiedemann Syndrome (BWS) where imprinting is known to be a contributing factor. We conclude that large-scale systematic analyses of this genre are necessary for the full impact of genomic imprinting on mammalian gene expression and phenotype to be elucidated.

Indexed as

Genomic ImprintingUniparental DisomyAnimalsBrainChromosomes, MammalianExpressed Sequence TagsGene Expression ProfilingGenomicsHumansMiceNucleic Acid ProbesOligonucleotide Array Sequence AnalysisPlacentaNucleic Acid Probes

Identifiers

PMID16855283
PMCPMC1524921

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.