Evidence map›Paper›PMID 16847692›Full record

ArticleHuman genetics2006

Identification of sequence motifs at the breakpoint junctions in three t(1;9)(p36.3;q34) and delineation of mechanisms involved in generating balanced translocations.

Marzena Gajecka, Adam Pavlicek, Caron D Glotzbach, Blake C Ballif, Malgorzata Jarmuz, Jerzy Jurka, Lisa G Shaffer

Abstract read
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In one paragraph

Article in Human genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 65 citations in OpenAlex.

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  13. A de novo apparently balanced translocation [46,XY,t(2;9)(p13;p24)] interrupting RAB11FIP5 identifies a potential candidate gene for autism spectrum disorder.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2008
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Marzena GajeckaHealth Research and Education Center, Washington State University Spokane, Spokane, WA, 99210-1495, USA.
Adam Pavlicek
Caron D Glotzbach
Blake C Ballif
Malgorzata Jarmuz
Jerzy Jurka
Lisa G Shaffer
Washington State University Spokane · USGenetic Information Research Institute · USSignature Research (United States) · US

Funding

Telomere integrity of de novo terminal deletionsP01HD039420 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2001 to 2005
$4.7M
NICHD NIH HHS P01 HD39420
6 · The paper itself

Abstract

Although approximately 1 in 500 individuals carries a reciprocal translocation, little is known about the mechanisms that result in their formation. We analyzed the sequences surrounding the breakpoints in three unbalanced translocations of 1p and 9q, all of which were designated t(1;9)(p36.3;q34), to investigate the presence of sequence motifs that might mediate nonhomologous end joining (NHEJ). The breakpoint regions were unique in all individuals. Two of three translocations demonstrated insertions and duplications at the junctions, suggesting NHEJ in the formation of the rearrangements. No homology was identified in the breakpoint regions, further supporting NHEJ. We found translin motifs at the breakpoint junctions, suggesting the involvement of translin in the joining of the broken chromosome ends. We propose a model for balanced translocation formation in humans similar to transposition in bacteria, in which staggered nicks are repaired resulting in duplications and insertions at the translocation breakpoints.

Indexed as

Chromosome BreakageChromosomes, Human, Pair 1Chromosomes, Human, Pair 9Base SequenceFemaleGene RearrangementHumansMaleModels, GeneticMolecular Sequence DataRecombination, GeneticRepetitive Sequences, Nucleic AcidSequence Homology, Nucleic AcidTranslocation, Genetic

Identifiers

PMID16847692
OpenAlexW2049659868

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.