Evidence map›Paper›PMID 16847336›Full record

ArticleMolecular and cellular biology2006

A distant upstream locus control region is critical for expression of the Kit receptor gene in mast cells.

Georgina Berrozpe, Valter Agosti, Christine Tucker, Cedric Blanpain, Katia Manova, Peter Besmer

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Georgina BerrozpeMemorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA.
Valter Agosti
Christine Tucker
Cedric Blanpain
Katia Manova
Peter Besmer
Cornell University · USHoward Hughes Medical Institute · USKettering University · US

Funding

CONTROL OF PROSTATE-SPECIFIC GENE EXPRESSIONR01DK055748 · NIDDK · VANDERBILT UNIVERSITY · PI MATUSIK, ROBERT J. · 1999 to 2013
$4.1M
BHP HRSA HHS DH38908NIDDK NIH HHS HL/DK55748NIDDK NIH HHS R01 DK055748
6 · The paper itself

Abstract

The Kit receptor tyrosine kinase functions in hematopoiesis, melanogenesis, and gametogenesis and in interstitial cells of Cajal. We previously identified two upstream hypersensitive site (HS) clusters in mast cells and melanocytes. Here we investigated the roles of these 5' HS sequences in Kit expression using transgenic mice carrying Kit-GFP reporter constructs. In these mice there is close correspondence between Kit-GFP reporter and endogenous Kit gene expression in most tissues analyzed. Deletion analysis defined the 5' upstream HS cluster region as critical for Kit expression in mast cells. Furthermore, chromatin immunoprecipitation analysis in mast cells showed that H3 and H4 histone hyperacetylation and RNA polymerase II recruitment within the Kit promoter and in the 5' HS region were associated with Kit expression. Therefore, the 5' upstream hypersensitivity sites appear to be critical components of locus control region-mediated Kit gene activation in mast cells.

Indexed as

Gene Expression RegulationLocus Control RegionAnimalsBone Marrow CellsCells, CulturedCerebellumChromatinFemaleGenes, ReporterHistonesMaleMast CellsMiceMice, TransgenicNucleic Acid ConformationOvaryChromatinHistonesProto-Oncogene Proteins c-kitRecombinant Fusion ProteinsRNA Polymerase II

Identifiers

PMID16847336
PMCPMC1592758
OpenAlexW2128690519

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.