Evidence map›Paper›PMID 16847312›Full record

ArticleMolecular and cellular biology2006

Tissue-specific chromatin modifications at a multigene locus generate asymmetric transcriptional interactions.

Eung Jae Yoo, Isabela Cajiao, Jeong-Seon Kim, Atsushi P Kimura, Aiwen Zhang, Nancy E Cooke, Stephen A Liebhaber

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Eung Jae YooDepartment of Genetics, University of Pennsylvania School of Medicine, 415 Curie Blvd., 428 Clinical Research Building, Philadelphia, PA 19104, USA.
Isabela Cajiao
Jeong-Seon Kim
Atsushi P Kimura
Aiwen Zhang
Nancy E Cooke
Stephen A Liebhaber
University of Pennsylvania · US

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL A. LAZAR · 1986 to 2026
$48.3M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 1997 to 2026
$32.5M
SOMATOGENIC/LACTOGENIC HORMONES OF PLACENTA/PITUITARYR01HD025147 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI LIEBHABER, STEPHEN AARON · 1989 to 2014
$5.4M
Activation of Human Placental Hormonal ExpressionR01HD046737 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI LIEBHABER, STEPHEN AARON · 2004 to 2013
$4.1M
NCI NIH HHS P30 CA016520NCI NIH HHS P30CA16520NICHD NIH HHS HD046737NICHD NIH HHS R01 HD025147NICHD NIH HHS R01 HD046737NICHD NIH HHS R01 HD25147NIDDK NIH HHS P30 DK019525NIDDK NIH HHS P30 DK050306NIDDK NIH HHS P30DK19525NIDDK NIH HHS P30DK50306
6 · The paper itself

Abstract

Random assortment within mammalian genomes juxtaposes genes with distinct expression profiles. This organization, along with the prevalence of long-range regulatory controls, generates a potential for aberrant transcriptional interactions. The human CD79b/GH locus contains six tightly linked genes with three mutually exclusive tissue specificities and interdigitated control elements. One consequence of this compact organization is that the pituitary cell-specific transcriptional events that activate hGH-N also trigger ectopic activation of CD79b. However, the B-cell-specific events that activate CD79b do not trigger reciprocal activation of hGH-N. Here we utilized DNase I hypersensitive site mapping, chromatin immunoprecipitation, and transgenic models to explore the basis for this asymmetric relationship. The results reveal tissue-specific patterns of chromatin structures and transcriptional controls at the CD79b/GH locus in B cells distinct from those in the pituitary gland and placenta. These three unique transcriptional environments suggest a set of corresponding gene expression pathways and transcriptional interactions that are likely to be found juxtaposed at multiple sites within the eukaryotic genome.

Indexed as

Gene Expression RegulationTranscription, GeneticAnimalsB-LymphocytesCD79 AntigensCell LineChromatinDeoxyribonuclease IHistonesHuman Growth HormoneHumansLocus Control RegionMiceMice, TransgenicCD79 AntigensCD79B protein, humanChromatinDeoxyribonuclease IHistonesHuman Growth Hormone

Identifiers

PMID16847312
PMCPMC1592780
OpenAlexW2117389801

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.