Evidence map›Paper›PMID 16847180›Full record

ArticleArchives of otolaryngology--head & neck surgery2006

Association of the FBXO11 gene with chronic otitis media with effusion and recurrent otitis media: the Minnesota COME/ROM Family Study.

Fernando Segade, Kathleen A Daly, Dax Allred, Pamela J Hicks, Miranda Cox, Mark Brown, Rachel E Hardisty-Hughes, Steve D M Brown, Stephen S Rich, Donald W Bowden

Open access · greenAbstract read
In one paragraph

Article in Archives of otolaryngology--head & neck surgery, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Mutation inFrontiers in genetics · 2020
    Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Observational
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Fernando SegadeDepartment of Internal Medicine, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA.
Kathleen A Daly
Dax Allred
Pamela J Hicks
Miranda Cox
Mark Brown
Rachel E Hardisty-Hughes
Steve D M Brown
Stephen S Rich
Donald W Bowden
Wake Forest University · USUniversity of Minnesota · US

Funding

GENETIC EPIDEMIOLOGY OF CHRONIC/RECURRENT OTITIS MEDIAR01DC003166 · NIDCD · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DALY, KATHLEEN ANN · 2000 to 2010
$4.5M
Otitis Media Core CenterP30DC004660 · NIDCD · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DALY, KATHLEEN ANN · 2001 to 2005
$2.1M
Medical Research Council MC_U142684172Medical Research Council MC_U142684175NIDCD NIH HHS P30 DC004660NIDCD NIH HHS P30 DC04660NIDCD NIH HHS R01 DC003166NIDCD NIH HHS R01 DC03166
6 · The paper itself

Abstract

objectiveThe FBXO11 gene is the human homologue of the gene mutated in the novel deaf mouse mutant jeff (Jf), a single gene model of otitis media. We have evaluated single nucleotide polymorphisms (SNPs) in the FBXO11 gene for association with chronic otitis media with effusion/recurrent otitis media (COME/ROM).

designA total of 13 SNPs were genotyped across the 98.7 kilobases of genomic DNA encompassing FBXO11. Data were analyzed for single SNP association using generalized estimating equations, and haplotypes were evaluated using Pedigree Disequilibrium Test methods. PATIENTS: The Minnesota COME/ROM Family Study, a group of 142 families (619 subjects) with multiple affected individuals with COME/ROM.

main outcome measuresGenetic association of COME/ROM with polymorphisms in FBXO11.

resultsThe FBXO11 SNPs are contained in a single linkage disequilibrium haplotype block. Ten of the 13 SNPs were sufficiently polymorphic in the sample to permit analysis. In univariate genetic analysis, 1 reference SNP (hereinafter rs) (rs2134056) showed nominal evidence of association to COME/ROM (P = .02), and 2 SNPs approached significance (rs2020911, P = .06; rs3136367, P = .09). In multivariable analyses, including known risk factors for COME/ROM (sex, exposure to smoking, attending day care centers, no prior breastfeeding, and having allergies), the evidence of independent association was reduced for each SNP (eg, rs2134056, from P = .02 to P = .08). In subsequent analyses using the Pedigree Disequilibrium Test, the association of FBXO11 SNP rs2134056 (P = .06) with COME/ROM was confirmed. Incorporating multiple SNPs in 2- and 3-locus SNP haplotypes, those haplotypes containing rs2134056 also exhibited evidence of association of FBXO11 and COME/ROM (P values ranging from .03 to .10).

conclusionWe have observed evidence consistent with an association between polymorphisms in FBXO11, the human homologue of the Jeff mouse model gene, and COME/ROM.

Indexed as

AnimalsChronic DiseaseDisease Models, AnimalF-Box ProteinsGenotypeHaplotypesHumansLinkage DisequilibriumMiceOtitis Media with EffusionPolymorphism, Single NucleotideProtein-Arginine N-MethyltransferasesProteinsRecurrenceF-Box ProteinsFBXO11 protein, humanJF protein, mouseProtein-Arginine N-MethyltransferasesProteins

Identifiers

PMID16847180
PMCPMC1904347
OpenAlexW2071002080

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.