Evidence map›Paper›PMID 16846230›Full record

ArticleBiochemistry2006

Solution structure and folding characteristics of the C-terminal SH3 domain of c-Crk-II.

Vasant Muralidharan, Kaushik Dutta, Jaehyun Cho, Miquel Vila-Perello, Daniel P Raleigh, David Cowburn, Tom W Muir

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. The adaptor protein Crk in immune response.Immunology and cell biology · 2014
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Tuning protein autoinhibition by domain destabilization.Nature structural & molecular biology · 2011
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Vasant MuralidharanLaboratory of Synthetic Protein Chemistry, The Rockefeller University, New York, New York 10021, USA.
Kaushik Dutta
Jaehyun Cho
Miquel Vila-Perello
Daniel P Raleigh
David Cowburn
Tom W Muir
New York Structural Biology Center · USState University of New York · USRockefeller University · US

Funding

900 MHz NMR Spectrometer for Structural BiologyP41GM066354 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI COWBURN, DAVID · 2002 to 2006
$4.7M
Regulation and Folding of a Multidomain Adaptor ProteinR01GM055843 · NIGMS · ROCKEFELLER UNIVERSITY · PI MUIR, TOM · 2002 to 2009
$2.7M
Structural Biology of Protein KinasesR01GM047021 · NIGMS · ROCKEFELLER UNIVERSITY · PI COWBURN, DAVID · 1992 to 2008
$2.4M
Lectins in Insect ImmunityR01GM066356 · NIGMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI YU, XIAO-QIANG · 2002 to 2011
$1.9M
Folding of Alpha-Beta Proteins at High ResolutionR01GM070941 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI RALEIGH, DANIEL P · 2004 to 2007
$1.1M
CHEMICAL BASIS OF THE SH3 DOMAIN STRUCTURER29GM055843 · NIGMS · ROCKEFELLER UNIVERSITY · PI MUIR, TOM W · 1997 to 2001
$217k
NIGMS NIH HHS GM-47021NIGMS NIH HHS GM-55843-07NIGMS NIH HHS GM-66356NIGMS NIH HHS GM-70941NIGMS NIH HHS P41 GM066354NIGMS NIH HHS R01 GM047021NIGMS NIH HHS R01 GM055843NIGMS NIH HHS R01 GM066356NIGMS NIH HHS R01 GM070941NIGMS NIH HHS R29 GM055843
6 · The paper itself

Abstract

Crk-II is a signaling adaptor protein that is involved in many cellular processes including apoptosis, proliferation, and differentiation. It has a modular domain architecture consisting of an Src homology 2 domain (SH2) followed by two Src homology 3 (SH3) domains. The structures and ligand-binding properties of the SH2 and the middle SH3 domains are well-characterized. Several studies suggest that the C-terminal SH3 domain plays an important regulatory role in the protein; however, no structural information is available on this domain, and relatively little is known about its binding partners. In the current work, we have solved the solution NMR structure of the C-terminal SH3 domain. The domain adopts the standard SH3 fold comprising a five-stranded beta barrel. In agreement with alignment and modeling studies, the structure indicates that the canonical-binding surface of the SH3 domain is unusually polar and suggests that this domain may not bind typical PXXP ligands or that it may bind them with reduced affinity. Thermodynamic and kinetic studies show that the domain folds in a reversible two-state manner and that the stability of the fold is similar to that observed for other SH3 domains. These studies offer some insight into the likely structural and thermodynamic consequences of point mutations in the cSH3 domain that are known to deregulate Crk-II function. Our results set the stage for a better understanding the role of the cSH3 domain in the context of the full-length protein.

Indexed as

Protein FoldingAmino Acid SequenceHumansModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProto-Oncogene Proteins c-crkSequence Alignmentsrc Homology DomainsProto-Oncogene Proteins c-crk

Identifiers

PMID16846230
PMCPMC10862352
OpenAlexW2069229776

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.