Evidence map›Paper›PMID 16846223›Full record

ArticleBiochemistry2006

No evidence from FTIR difference spectroscopy that glutamate-189 of the D1 polypeptide ligates a Mn ion that undergoes oxidation during the S0 to S1, S1 to S2, or S2 to S3 transitions in photosystem II.

Melodie A Strickler, Warwick Hillier, Richard J Debus

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Substitution of the D1-AsnThe Journal of biological chemistry · 2018
    Article
  3. Identifying carboxylate ligand vibrational modes in photosystem II with QM/MM methods.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  4. Quantum mechanics/molecular mechanics simulation of the ligand vibrations of the water-oxidizing MnProceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  5. Warwick Hillier: a tribute.Photosynthesis research · 2014
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. On the structure of the manganese complex of photosystem II: extended-range EXAFS data and specific atomic-resolution models for four S-states.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2008
    Article
  12. Article
  13. Article
  14. Article
  15. Proton-coupled electron transfer.Chemical reviews · 2007
    Review
  16. The PSII calcium site revisited.Photosynthesis research · 2007
    Review
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Melodie A StricklerDepartment of Biochemistry, University of California, Riverside, California 92521-0129, USA.
Warwick Hillier
Richard J Debus
Australian National University · AUUniversity of California, Riverside · US

Funding

EPR &Optical Studies of Photosynthetic Water OxidationR01GM066136 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI DEBUS, RICHARD J · 2002 to 2005
$746k
NIGMS NIH HHS GM66136NIGMS NIH HHS R01 GM066136
6 · The paper itself

Abstract

In the recent X-ray crystallographic structural models of photosystem II, Glu189 of the D1 polypeptide is assigned as a ligand of the oxygen-evolving Mn(4) cluster. To determine if D1-Glu189 ligates a Mn ion that undergoes oxidation during one or more of the S(0) --> S(1), S(1) --> S(2), and S(2) --> S(3) transitions, the FTIR difference spectra of the individual S-state transitions in D1-E189Q and D1-E189R mutant PSII particles from the cyanobacterium Synechocystis sp. PCC 6803 were compared with those in wild-type PSII particles. Remarkably, the data show that neither mutation significantly alters the mid-frequency regions (1800-1200 cm(-)(1)) of any of the FTIR difference spectra. Importantly, neither mutation eliminates any specific symmetric or asymmetric carboxylate stretching mode that might have been assigned to D1-Glu189. The small spectral alterations that are observed are similar in amplitude to those that are observed in wild-type PSII particles that have been exchanged into FTIR analysis buffer by different methods or those that are observed in D2-H189Q mutant PSII particles (the residue D2-His189 is located >25 A from the Mn(4) cluster and accepts a hydrogen bond from Tyr Y(D)). The absence of significant mutation-induced spectral alterations in the D1-Glu189 mutants shows that the oxidation of the Mn(4) cluster does not alter the frequencies of the carboxylate stretching modes of D1-Glu189 during the S(0) --> S(1), S(1) --> S(2), or S(2) --> S(3) transitions. One explanation of these data is that D1-Glu189 ligates a Mn ion that does not increase its charge or oxidation state during any of these S-state transitions. However, because the same conclusion was reached previously for D1-Asp170, and because the recent X-ray crystallographic structural models assign D1-Asp170 and D1-Glu189 as ligating different Mn ions, this explanation requires that (1) the extra positive charge that develops on the Mn(4) cluster during the S(1) --> S(2) transition be localized on the Mn ion that is ligated by the alpha-COO(-) group of D1-Ala344 and (2) any increase in positive charge that develops on the Mn(4) cluster during the S(0) --> S(1) and S(2) --> S(3) transitions be localized on the one Mn ion that is not ligated by D1-Asp170, D1-Glu189, or D1-Ala344. An alternative explanation of the FTIR data is that D1-Glu189 does not ligate the Mn(4) cluster. This conclusion would be consistent with earlier spectroscopic analyses of D1-Glu189 mutants, but would require that the proximity of D1-Glu189 to manganese in the X-ray crystallographic structural models be an artifact of the radiation-induced reduction of the Mn(4) cluster that occurred during the collection of the X-ray diffraction data.

Indexed as

Glutamic AcidManganeseMutagenesis, Site-DirectedOxidation-ReductionPhotosystem II Protein ComplexSpectroscopy, Fourier Transform InfraredSynechocystisGlutamic AcidManganesePhotosystem II Protein Complexphotosystem II, psbA subunit

Identifiers

PMID16846223
PMCPMC2515374
OpenAlexW4232485649

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.