ArticleNucleic acids research2006
Protein Peeling 2: a web server to convert protein structures into series of protein units.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.
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Who cites it
5 citing papers in PubMed.
- ICARUS: flexible protein structural alignment based on Protein Units.Bioinformatics (Oxford, England) · 2023Article
- Analysis of Integrin αInternational journal of molecular sciences · 2022Article
- SARS-CoV 2 spike protein S1 subunit as an ideal target for stable vaccines: A bioinformatic study.Materials today. Proceedings · 2022Article
- VLDP web server: a powerful geometric tool for analysing protein structures in their environment.Nucleic acids research · 2013Article
- Selective constraint on human pre-mRNA splicing by protein structural properties.Genome biology and evolution · 2012Article
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Authors and funding
4 authors.
Funding
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Abstract
Protein Peeling 2 (PP2) is a web server for the automatic identification of protein units (PUs) given the 3D coordinates of a protein. PUs are an intermediate level of protein structure description between protein domains and secondary structures. It is a new tool to better understand and analyze the organization of protein structures. PP2 uses only the matrices of protein contact probabilities and cuts the protein structures optimally using Matthews' coefficient correlation. An index assesses the compactness quality of each PU. Results are given both textually and graphically using JMol and PyMol softwares. The server can be accessed from http://www.ebgm.jussieu.fr/~gelly/index.html.
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