ArticleNucleic acids research2006
Next station in microarray data analysis: GEPAS.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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Who cites it
46 citing papers in PubMed.
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- Lmx1b is required for the glutamatergic fates of a subset of spinal cord neurons.Neural development · 2016Article
- Babelomics 5.0: functional interpretation for new generations of genomic data.Nucleic acids research · 2015Article
- Up-regulation of anti-apoptotic genes confers resistance to the novel anti-leukaemic compound PEP005 in primary AML cells.Oncoscience · 2014Article
- MiR-210 is induced by Oct-2, regulates B cells, and inhibits autoantibody production.Journal of immunology (Baltimore, Md. : 1950) · 2013Article
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- Transcriptome profiling of sexual maturation and mating in the Mediterranean fruit fly, Ceratitis capitata.PloS one · 2012Article
- Transcriptomic profiling of citrus fruit peel tissues reveals fundamental effects of phenylpropanoids and ethylene on induced resistance.Molecular plant pathology · 2011Article
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- Introns form compositional clusters in parallel with the compositional clusters of the coding sequences to which they pertain.Journal of molecular evolution · 2011Article
- Defence responses of Arabidopsis thaliana to infection by Pseudomonas syringae are regulated by the circadian clock.PloS one · 2011Article
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- Gene expression profiling of subcutaneous adipose tissue in morbid obesity using a focused microarray: distinct expression of cell-cycle- and differentiation-related genes.BMC medical genomics · 2010Article
- Research resource: Transcriptional profiling reveals different pseudohypoxic signatures in SDHB and VHL-related pheochromocytomas.Molecular endocrinology (Baltimore, Md.) · 2010Article
- Deregulated expression of the polycomb-group protein SUZ12 target genes characterizes mantle cell lymphoma.The American journal of pathology · 2010Article
- Integrated protein network and microarray analysis to identify potential biomarkers after myocardial infarction.Functional & integrative genomics · 2010Article
- Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.Nucleic acids research · 2010Article
- High-resolution genome-wide analysis of chromosomal alterations in elastofibroma.Virchows Archiv : an international journal of pathology · 2010Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Gene Expression Profile Analysis Suite (GEPAS) has been running for more than four years. During this time it has evolved to keep pace with the new interests and trends in the still changing world of microarray data analysis. GEPAS has been designed to provide an intuitive although powerful web-based interface that offers diverse analysis options from the early step of preprocessing (normalization of Affymetrix and two-colour microarray experiments and other preprocessing options), to the final step of the functional annotation of the experiment (using Gene Ontology, pathways, PubMed abstracts etc.), and include different possibilities for clustering, gene selection, class prediction and array-comparative genomic hybridization management. GEPAS is extensively used by researchers of many countries and its records indicate an average usage rate of 400 experiments per day. The web-based pipeline for microarray gene expression data, GEPAS, is available at http://www.gepas.org.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.