ArticleNucleic acids research2006
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
68 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Pooled it
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- Genome sequencing and assembly of near threatened Clarias dussumieri (Valenciennes, 1840), an endemic catfish of peninsular India.Scientific data · 2024Article
- Genome sequencing and assembly of Indian major carp, Cirrhinus mrigala (Hamilton, 1822).Scientific data · 2024Article
- Spillover of Newcastle disease virus to Himalayan Griffon vulture: a possible food-based transmission.Virus genes · 2024Article
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- Potential role of the regulatoryFrontiers in plant science · 2023Article
- The electronic tree of life (eToL): a net of long probes to characterize the microbiome from RNA-seq data.BMC microbiology · 2022Article
- Potent neutralization by monoclonal human IgM against SARS-CoV-2 is impaired by class switch.EMBO reports · 2022Article
- CerealESTDb: A Comprehensive Resource for Abiotic Stress-Responsive Annotated ESTs With Predicted Genes, Gene Ontology, and Metabolic Pathways in Major Cereal Crops.Frontiers in genetics · 2022Article
- Development of a new set of genic SSR markers in the genus3 Biotech · 2021Article
- Functional annotations of ESTs ofSaudi journal of biological sciences · 2021Article
- Cross-transferability of SSR markers developed in Rhododendron species of Himalaya.Molecular biology reports · 2020Article
- Development of polymorphic EST-SSR markers and their applicability in genetic diversity evaluation in Rhododendron arboreum.Molecular biology reports · 2020Article
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- New EST-SSR Markers for Individual Genotyping of Opium Poppy Cultivars (Plants (Basel, Switzerland) · 2019Article
- Crustacean Genome Exploration Reveals the Evolutionary Origin of White Spot Syndrome Virus.Journal of virology · 2019Article
- Article
8 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Expressed sequence tag (EST) sequencing has proven to be an economically feasible alternative for gene discovery in species lacking a draft genome sequence. Ongoing large-scale EST sequencing projects feel the need for bioinformatics tools to facilitate uniform EST handling. This brings about a renewed importance for a universal tool for processing and functional annotation of large sets of ESTs. EGassembler (http://egassembler.hgc.jp/) is a web server, which provides an automated as well as a user-customized analysis tool for cleaning, repeat masking, vector trimming, organelle masking, clustering and assembling of ESTs and genomic fragments. The web server is publicly available and provides the community a unique all-in-one online application web service for large-scale ESTs and genomic DNA clustering and assembling. Running on a Sun Fire 15K supercomputer, a significantly large volume of data can be processed in a short period of time. The results can be used to functionally annotate genes, to facilitate splice alignment analysis, to link the transcripts to genetic and physical maps, design microarray chips, to perform transcriptome analysis and to map to KEGG metabolic pathways. The service provides an excellent bioinformatics tool to research groups in wet-lab as well as an all-in-one-tool for sequence handling to bioinformatics researchers.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.