ArticleNucleic acids research2006
ASGS: an alternative splicing graph web service.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
9 citing papers in PubMed, 14 citations in OpenAlex.
- A model for isoform-level differential expression analysis using RNA-seq data without pre-specifying isoform structure.PloS one · 2022Article
- SpliceDetector: a software for detection of alternative splicing events in human and model organisms directly from transcript IDs.Scientific reports · 2018Article
- Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.Bioinformatics (Oxford, England) · 2013Article
- Identification of conserved splicing motifs in mutually exclusive exons of 15 insect species.BMC genomics · 2012Article
- Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases.BMC genomics · 2009Article
- Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse.BMC genomics · 2009Article
- A general definition and nomenclature for alternative splicing events.PLoS computational biology · 2008Article
- ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets.Nucleic acids research · 2007Article
- ECgene: an alternative splicing database update.Nucleic acids research · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis. This freely available web service can be accessed at http://asgs.biolinfo.org.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.