Evidence map›Paper›PMID 16844905›Full record

ArticleThe Plant cell2006

Analysis of the Petunia TM6 MADS box gene reveals functional divergence within the DEF/AP3 lineage.

Anneke S Rijpkema, Stefan Royaert, Jan Zethof, Gerard van der Weerden, Tom Gerats, Michiel Vandenbussche

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Plant cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 143 citations in OpenAlex.

  1. Article
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  5. Insights into the functional role of tomatoHorticulture research · 2024
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  9. Genome-Wide Identification of MADS-Box Genes inInternational journal of molecular sciences · 2023
    Article
  10. Flower Development in the Solanaceae.Methods in molecular biology (Clifton, N.J.) · 2023
    Review
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  16. Draft genome of the famous ornamental plantEcology and evolution · 2020
    Article
  17. Article
  18. PeerJ · 2020
    Article
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Anneke S RijpkemaDepartment of Plant Genetics, Radboud University Nijmegen, 6525 ED Nijmegen, The Netherlands.
Stefan Royaert
Jan Zethof
Gerard van der Weerden
Tom Gerats
Michiel Vandenbussche
Radboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antirrhinum majus DEFICIENS (DEF) and Arabidopsis thaliana APETALA3 (AP3) MADS box proteins are required to specify petal and stamen identity. Sampling of DEF/AP3 homologs revealed two types of DEF/AP3 proteins, euAP3 and TOMATO MADS BOX GENE6 (TM6), within core eudicots, and we show functional divergence in Petunia hybrida euAP3 and TM6 proteins. Petunia DEF (also known as GREEN PETALS [GP]) is expressed mainly in whorls 2 and 3, and its expression pattern remains unchanged in a blind (bl) mutant background, in which the cadastral C-repression function in the perianth is impaired. Petunia TM6 functions as a B-class organ identity protein only in the determination of stamen identity. Atypically, Petunia TM6 is regulated like a C-class rather than a B-class gene, is expressed mainly in whorls 3 and 4, and is repressed by BL in the perianth, thereby preventing involvement in petal development. A promoter comparison between DEF and TM6 indicates an important change in regulatory elements during or after the duplication that resulted in euAP3- and TM6-type genes. Surprisingly, although TM6 normally is not involved in petal development, 35S-driven TM6 expression can restore petal development in a def (gp) mutant background. Finally, we isolated both euAP3 and TM6 genes from seven solanaceous species, suggesting that a dual euAP3/TM6 B-function system might be the rule in the Solanaceae.

Indexed as

Base SequenceEvolution, MolecularFlowersGenetic Complementation TestMADS Domain ProteinsMolecular Sequence DataMutationPetuniaPhenotypePhylogenyPlant ProteinsPromoter Regions, GeneticSequence AlignmentGP protein, Petunia x hybridaMADS Domain ProteinsPlant Proteins

Identifiers

PMID16844905
PMCPMC1533978
OpenAlexW2171398974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.