Evidence map›Paper›PMID 16844787›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

The 2.7-Angstrom crystal structure of a 194-kDa homodimeric fragment of the 6-deoxyerythronolide B synthase.

Yinyan Tang, Chu-Young Kim, Irimpan I Mathews, David E Cane, Chaitan Khosla

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed.

  1. Article
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  6. Chemical biology research in RIKEN NPDepo aimed at agricultural applications.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Structure of a modular polyketide synthase reducing region.Structure (London, England : 1993) · 2023
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yinyan TangDepartment of Chemistry, Stanford University, Stanford, CA 94305, USA.
Chu-Young Kim
Irimpan I Mathews
David E Cane
Chaitan Khosla

Funding

BIOSYNTHESIS OF MICROBIAL PRODUCTSR01GM022172 · NIGMS · BROWN UNIVERSITY · PI CANE, DAVID E · 1985 to 2017
$5.7M
ENGINEERED BIOSYNTHESIS OF NOVEL MACROLACTONE POLYKETIDER01CA066736 · NCI · STANFORD UNIVERSITY · PI KHOSLA, CHAITAN · 1995 to 2008
$3.0M
NCI NIH HHS CA 66736NCI NIH HHS R01 CA066736NIGMS NIH HHS GM 22172NIGMS NIH HHS R01 GM022172
6 · The paper itself

Abstract

The x-ray crystal structure of a 194-kDa fragment from module 5 of the 6-deoxyerythronolide B synthase has been solved at 2.7 Angstrom resolution. Each subunit of the homodimeric protein contains a full-length ketosynthase (KS) and acyl transferase (AT) domain as well as three flanking "linkers." The linkers are structurally well defined and contribute extensively to intersubunit or interdomain interactions, frequently by means of multiple highly conserved residues. The crystal structure also reveals that the active site residue Cys-199 of the KS domain is separated from the active site residue Ser-642 of the AT domain by approximately 80 Angstrom. This distance is too large to be covered simply by alternative positioning of a statically anchored, fully extended phosphopantetheine arm of the acyl carrier protein domain from module 5. Thus, substantial domain reorganization appears necessary for the acyl carrier protein to interact successively with both the AT and the KS domains of this prototypical polyketide synthase module. The 2.7-Angstrom KS-AT structure is fully consistent with a recently reported lower resolution, 4.5-Angstrom model of fatty acid synthase structure, and emphasizes the close biochemical and structural similarity between polyketide synthase and fatty acid synthase enzymology.

Indexed as

Binding SitesCatalysisCloning, MolecularCrystallography, X-RayDimerizationModels, BiologicalModels, MolecularPolyketide SynthasesProtein ConformationProtein Structure, TertiarySaccharopolysporaSubstrate SpecificityPolyketide Synthases

Identifiers

PMID16844787
PMCPMC1636687

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.