Evidence map›Paper›PMID 16844784›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Dissecting virulence pathways of Mycobacterium tuberculosis through protein-protein association.

Amit Singh, Deborah Mai, Ashwani Kumar, Adrie J C Steyn

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 174 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Protein Architecture and Composition in Mycobacterium tuberculosis.Advances in experimental medicine and biology · 2026
    Review
  9. Article
  10. Article
  11. TheFrontiers in microbiology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Orphan response regulator NnaR is critical for nitrate and nitrite assimilation inFrontiers in cellular and infection microbiology · 2024
    Article
  16. Article
  17. The role of thioredoxin proteins inBiochemistry and biophysics reports · 2023
    Article
  18. Septum site placement inMicrobiology (Reading, England) · 2023
    Article
  19. Review
  20. Frontiers in cellular and infection microbiology · 2023
    Article

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Amit SinghDepartment of Microbiology, University of Alabama, Birmingham, AL 35294, USA.
Deborah Mai
Ashwani Kumar
Adrie J C Steyn
University of Alabama at Birmingham · US

Funding

WhiB3 in M. tuberculosis virulenceR01AI058131 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI STEYN, ADRIE JC · 2004 to 2014
$3.6M
Role of WhiB3 in M. tuberculosis virulenceR56AI058131 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI STEYN, ADRIE JC · 2009 to 2009
$366k
NIAID NIH HHS AI058131NIAID NIH HHS R01 AI058131NIAID NIH HHS R56 AI058131
6 · The paper itself

Abstract

The sudden increase in information derived from the completed Mycobacterium tuberculosis (Mtb) genome sequences has revealed the need for approaches capable of converting raw genome sequence data into functional information. To date, an experimental system for studying protein-protein association in mycobacteria is not available. We have developed a simple system, termed mycobacterial protein fragment complementation (M-PFC), that is based upon the functional reconstitution of two small murine dihydrofolate reductase domains independently fused to two interacting proteins. Using M-PFC, we have successfully demonstrated dimerization of yeast GCN4, interaction between Mtb KdpD and KdpE, and association between Esat-6 and Cfp-10. We established the association between the sensor kinase, DevS, and response regulator, DevR, thereby demonstrating the potential of M-PFC to study protein associations in the mycobacterial membrane. To validate our system, we screened an Mtb library for proteins that associate with the secreted antigen Cfp-10 and consistently identified Esat-6 in our screens. Additional proteins that specifically associate with Cfp-10 include Rv0686 and Rv2151c (FtsQ), a component and substrate, respectively, of the evolutionary conserved signal recognition pathway; and Rv3596c (ClpC1), an AAA-ATPase chaperone involved in protein translocation and quality control. Our results provide empirical evidence that directly links the Mtb specialized secretion pathway with the evolutionary conserved signal recognition and SecA/SecYEG pathways, suggesting they share secretory components. We anticipate that M-PFC will be a major contributor to the systematic assembly of mycobacterial protein interaction maps that will lead to the development of better strategies for the control of tuberculosis.

Indexed as

Bacterial ProteinsBasic-Leucine Zipper Transcription FactorsDimerizationDNA-Binding ProteinsEscherichia coli ProteinsEvolution, MolecularGenetic Complementation TestMembrane ProteinsModels, BiologicalMycobacterium tuberculosisProtein Interaction MappingProtein TransportSaccharomyces cerevisiae ProteinsSignal TransductionSubstrate SpecificityTranscription FactorsBacterial ProteinsBasic-Leucine Zipper Transcription FactorsCFP-10 protein, Mycobacterium tuberculosisDNA-Binding ProteinsEscherichia coli ProteinsFtsQ protein, E coliGCN4 protein, S cerevisiaeMembrane ProteinsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID16844784
PMCPMC1544089
OpenAlexW2107133310

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.