Evidence map›Paper›PMID 16840317›Full record

ArticleJournal of virology2006

Replication of hepatitis C virus (HCV) RNA in mouse embryonic fibroblasts: protein kinase R (PKR)-dependent and PKR-independent mechanisms for controlling HCV RNA replication and mediating interferon activities.

Kyung-Soo Chang, Zhaohui Cai, Chen Zhang, Ganes C Sen, Bryan R G Williams, Guangxiang Luo

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Animal Models of Hepatitis C Virus Infection.Cold Spring Harbor perspectives in medicine · 2020
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Viral hepatitis: HCV compartmentalization in HCC: driver, passenger or both?Nature reviews. Gastroenterology & hepatology · 2016
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Visualizing hepatitis C virus infection in humanized mice.Journal of immunological methods · 2014
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Kyung-Soo ChangDepartment of Microbiology, Immunology, and Molecular Genetics, University of Kentucky College of Medicine, 800 Rose Street, Lexington, KY 40536-0298, USA.
Zhaohui Cai
Chen Zhang
Ganes C Sen
Bryan R G Williams
Guangxiang Luo
University of Kentucky · USCleveland Clinic · US

Funding

ANTIVIRAL ACTIONS OF INTERFERONSR01CA068782 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI SEN, GANES C. · 1995 to 2020
$7.6M
REGULATION OF INTERFERON-INDUCED DSRNA-ACTIVATED KINASER01AI034039 · NIAID · MONASH UNIVERSITY · PI WILLIAMS, BRYAN R. G. · 1993 to 2008
$2.5M
Cis-acting RNA elements in hepatitis C virus replicationR01AI051592 · NIAID · UNIVERSITY OF KENTUCKY · PI LUO, GUANGXIANG GEORGE · 2003 to 2007
$1.3M
Molecular Dissection of Hepatitis C Virus ReplicaseR01CA093712 · NCI · UNIVERSITY OF KENTUCKY · PI LUO, GUANGXIANG GEORGE · 2002 to 2006
$1.3M
INTERFERON-REGULATED DS RNA-ACTIVATED KINASE, PKRR21AI034039 · NIAID · CLEVELAND CLINIC FOUNDATION · PI WILLIAMS, BRYAN R. G. · 1998 to 1998
–
NCI NIH HHS CA 68782NCI NIH HHS CA 93712NCI NIH HHS R01 CA068782NCI NIH HHS R01 CA093712NIAID NIH HHS AI 34039NIAID NIH HHS AI 51592NIAID NIH HHS R01 AI034039NIAID NIH HHS R01 AI051592
6 · The paper itself

Abstract

Hepatitis C virus (HCV) infection causes chronic hepatitis and is currently treated with alpha interferon (IFN-alpha)-based therapies. The underlying mechanisms of chronic HCV infection and IFN-based therapies, however, have not been defined. Protein kinase R (PKR) was implicated in the control of HCV replication and mediation of IFN-induced antiviral response. In this report, we demonstrate that a subgenomic RNA replicon of genotype 2a HCV replicated efficiently in mouse embryonic fibroblasts (MEFs), as determined by cell colony formation efficiency and the detection of HCV proteins and both positive- and negative-strand RNAs. Additionally, the subgenomic HCV RNA was found to replicate more efficiently in the PKR knockout (PKR(-/-)) MEF than in the wild-type (PKR(+/+)) MEF. The knockdown expression of PKR by specific small interfering RNAs significantly enhanced the level of HCV RNA replication, suggesting that PKR is involved in the control of HCV RNA replication. The level of ISG56 (p56) was induced by HCV RNA replication, indicating the activation of PKR-independent antiviral pathways. Furthermore, IFN-alpha/beta inhibited HCV RNA replication in PKR(-/-) MEFs as efficiently as in PKR(+/+) MEFs. These findings demonstrate that PKR-independent antiviral pathways play important roles in controlling HCV replication and mediating IFN-induced antiviral effect. Our findings also provide a foundation for the development of transgenic mouse models of HCV replication and set a stage to further define the roles of cellular genes in the establishment of chronic HCV infection and the mediation of intracellular innate antiviral response by using MEFs derived from diverse gene knockout animals.

Indexed as

Virus ReplicationAnimalsAntiviral AgentsCarcinoma, HepatocellularColony-Forming Units AssayeIF-2 KinaseEmbryo, MammalianFibroblastsHepacivirusHumansInterferon-alphaInterferon-betaMiceMice, KnockoutRNA, Small InterferingRNA, ViralAntiviral AgentseIF-2 KinaseInterferon-alphaInterferon-betaRNA, Small InterferingRNA, Viral

Identifiers

PMID16840317
PMCPMC1563689
OpenAlexW2140816592

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.