Evidence map›Paper›PMID 16839182›Full record

ArticlePLoS genetics2006

In vivo robustness analysis of cell division cycle genes in Saccharomyces cerevisiae.

Hisao Moriya, Yuki Shimizu-Yoshida, Hiroaki Kitano

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 129 citations in OpenAlex.

  1. Article
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  7. Intra-Frontiers in genetics · 2023
    Article
  8. Article
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  11. Elevated Sporulation Efficiency in Fission YeastJournal of fungi (Basel, Switzerland) · 2021
    Article
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  17. Review
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Hisao MoriyaERATO-SORST Kitano Symbiotic Systems Project, Japan Science and Technology Agency, Shibuya-ku, Tokyo, Japan. hisaom@symbio.jst.go.jp
Yuki Shimizu-Yoshida
Hiroaki Kitano
Japan Science and Technology Agency · JPShibuya (Japan) · JPSystems Biology Institute · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intracellular biochemical parameters, such as the expression level of gene products, are considered to be optimized so that a biological system, including the parameters, works effectively. Those parameters should have some permissible range so that the systems have robustness against perturbations, such as noise in gene expression. However, little is known about the permissible range in real cells because there has been no experimental technique to test it. In this study, we developed a genetic screening method, named "genetic tug-of-war" (gTOW) that evaluates upper limit copy numbers of genes in a model eukaryote Saccharomyces cerevisiae, and we applied it for 30 cell-cycle related genes (CDC genes). The experiment provided unique quantitative data that could be used to argue the system-level properties of the cell cycle such as robustness and fragility. The data were used to evaluate the current computational model, and refinements to the model were suggested.

Indexed as

Genes, cdcCell CycleCell Cycle ProteinsComputational BiologyGenes, FungalGenetic TechniquesGenome, FungalGenomicsLeucinePlasmidsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCell Cycle ProteinsLeucineSaccharomyces cerevisiae Proteins

Identifiers

PMID16839182
PMCPMC1500812
OpenAlexW2034271226

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.