ArticleMolecular genetics and genomics : MGG2006
Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat.
Article in Molecular genetics and genomics : MGG, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.
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Who cites it
28 citing papers in PubMed, 1 synthesis or guideline pooled it, 77 citations in OpenAlex.
- Meta-Analysis Reveals Challenges and Gaps for Genome-to-Phenome Research Underpinning Plant Drought Response.International journal of molecular sciences · 2022Pooled it
- Transcriptome Profiling in Leaves of Wheat Genotype under Heat Stress.Plants (Basel, Switzerland) · 2022Article
- Identification of a Novel Quinvirus in the FamilyFrontiers in microbiology · 2021Article
- QTL Mapping Using a High-Density Genetic Map to Identify Candidate Genes Associated With Metribuzin Tolerance in Hexaploid Wheat (Frontiers in plant science · 2020Article
- Pm61: a recessive gene for resistance to powdery mildew in wheat landrace Xuxusanyuehuang identified by comparative genomics analysis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Exploring the heat-responsive chaperones and microsatellite markers associated with terminal heat stress tolerance in developing wheat.Functional & integrative genomics · 2017Article
- Transcriptional Responses of Chilean Quinoa (Frontiers in plant science · 2017Article
- Overexpression of cold-inducible wheat galactinol synthase confers tolerance to chilling stress in transgenic rice.Breeding science · 2015Article
- Harnessing Next Generation Sequencing in Climate Change: RNA-Seq Analysis of Heat Stress-Responsive Genes in Wheat (Triticum aestivum L.).Omics : a journal of integrative biology · 2015Article
- Unlocking Triticeae genomics to sustainably feed the future.Plant & cell physiology · 2013Review
- Analysis of expression profiles of selected genes associated with the regenerative property and the receptivity to gene transfer during somatic embryogenesis in Triticum aestivum L.Molecular biology reports · 2013Article
- Diversification of the duplicated F3h genes in Triticeae.Journal of molecular evolution · 2013Article
- Genome change in wheat observed through the structure and expression of α/β-gliadin genes.Functional & integrative genomics · 2012Article
- Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum).DNA research : an international journal for rapid publication of reports on genes and genomes · 2012Article
- RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.).Genome biology · 2011Article
- Advances in omics and bioinformatics tools for systems analyses of plant functions.Plant & cell physiology · 2011Review
- Characterization of a wheat HSP70 gene and its expression in response to stripe rust infection and abiotic stresses.Molecular biology reports · 2011Article
- Comparative gene expression analysis of susceptible and resistant near-isogenic lines in common wheat infected by Puccinia triticina.DNA research : an international journal for rapid publication of reports on genes and genomes · 2010Article
- Genomics and bioinformatics resources for crop improvement.Plant & cell physiology · 2010Review
- TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.Plant physiology · 2009Article
Corrections and comments
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Authors and funding
8 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In order to assess global changes in gene expression patterns in stress-induced tissues, we conducted large-scale analysis of expressed sequence tags (ESTs) in common wheat. Twenty-one cDNA libraries derived from stress-induced tissues, such as callus, as well as liquid cultures and abiotic stress conditions (temperature treatment, desiccation, photoperiod, moisture and ABA) were constructed. Several thousand colonies were randomly selected from each of these 21 cDNA libraries and sequenced from both the 5' and 3' ends. By computing abundantly expressed ESTs, correlated expression patterns of genes across the tissues were monitored. Furthermore, the relationships between gene expression profiles among the stress-induced tissues were inferred from the gene expression patterns. Multi-dimensional analysis of EST data is analogous to microarray experiments. As an example, genes specifically induced and/or suppressed by cold acclimation and heat-shock treatments were selected in silico. Four hundred and ninety genes showing fivefold induction or 218 genes for suppression in comparison to the control expression level were selected. These selected genes were annotated with the BLAST search. Furthermore, gene ontology was conducted for these genes with the InterPro search. Because genes regulated in response to temperature treatment were successfully selected, this method can be applied to other stress-treated tissues. Then, the method was applied to screen genes in response to abiotic stresses such as drought and ABA treatments. In silico selection of screened genes from virtual display should provide a powerful tool for functional plant genomics.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.