Evidence map›Paper›PMID 16823372›Full record

ArticleNature biotechnology2006

ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.

Akihisa Matsuyama, Ritsuko Arai, Yoko Yashiroda, Atsuko Shirai, Ayako Kamata, Shigeko Sekido, Yumiko Kobayashi, Atsushi Hashimoto, Makiko Hamamoto, Yasushi Hiraoka and 2 more

Erratum issuedAbstract read
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In one paragraph

Article in Nature biotechnology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 323 papers.

0numbers the graph read from it
0cells of the map it votes in
323citing papers in PubMed
15.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

323 citing papers in PubMed, 570 citations in OpenAlex.

  1. Article
  2. Gdt1, Gdt2 and the P-type ATPase Pmr1 regulate divalent cations (Ca²⁺ and Mn²⁺) in the fission yeast Schizosaccharomyces pombe.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
  3. The power of many: when genetics met yeasts and high-throughput.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
  4. Effects ofExperimental and therapeutic medicine · 2026
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  11. Formation of giant ER sheets by pentadecanoic acid causes lipotoxicity in fission yeast.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  15. Review
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263 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Akihisa MatsuyamaChemical Genetics Laboratory, RIKEN, Wako, Saitama 351-0198, Japan.
Ritsuko Arai
Yoko Yashiroda
Atsuko Shirai
Ayako Kamata
Shigeko Sekido
Yumiko Kobayashi
Atsushi Hashimoto
Makiko Hamamoto
Yasushi Hiraoka
Sueharu Horinouchi
Minoru Yoshida
RIKEN · JPJapan Science and Technology Agency · JPThe University of Tokyo · JPNational Institute of Information and Communications Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cloning of the entire set of an organism's protein-coding open reading frames (ORFs), or 'ORFeome', is a means of connecting the genome to downstream 'omics' applications. Here we report a proteome-scale study of the fission yeast Schizosaccharomyces pombe based on cloning of the ORFeome. Taking advantage of a recombination-based cloning system, we obtained 4,910 ORFs in a form that is readily usable in various analyses. First, we evaluated ORF prediction in the fission yeast genome project by expressing each ORF tagged at the 3' terminus. Next, we determined the localization of 4,431 proteins, corresponding to approximately 90% of the fission yeast proteome, by tagging each ORF with the yellow fluorescent protein. Furthermore, using leptomycin B, an inhibitor of the nuclear export protein Crm1, we identified 285 proteins whose localization is regulated by Crm1.

Indexed as

Gene LibraryAntifungal AgentsExportin 1 ProteinFatty Acids, UnsaturatedGene Expression Regulation, FungalGene OrderGenes, FungalInternetKaryopherinsLuminescent ProteinsOpen Reading FramesProteomicsReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiae ProteinsSchizosaccharomycesSchizosaccharomyces pombe ProteinsAntifungal AgentsExportin 1 ProteinFatty Acids, UnsaturatedKaryopherinsleptomycin BLuminescent ProteinsReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe Proteins

Identifiers

PMID16823372
OpenAlexW1981924974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.