Evidence map›Paper›PMID 16822311›Full record

ArticleRetrovirology2006

Involvement of HTLV-I Tax and CREB in aneuploidy: a bioinformatics approach.

Cynthia de la Fuente, Madhur V Gupta, Zachary Klase, Katharine Strouss, Patrick Cahan, Timothy McCaffery, Anthony Galante, Patricia Soteropoulos, Anne Pumfery, Masahiro Fujii and 1 more

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
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  11. The HTLV-1 Tax interactome.Retrovirology · 2008
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Cynthia de la FuenteThe George Washington University Medical Center, Department of Biochemistry and Molecular Biology, Washington, DC 20037, USA. bcmclf@gwumc.edu
Madhur V Gupta
Zachary Klase
Katharine Strouss
Patrick Cahan
Timothy McCaffery
Anthony Galante
Patricia Soteropoulos
Anne Pumfery
Masahiro Fujii
Fatah Kashanchi
Washington University Medical Center · USGeorge Washington University · USNiigata University · JP

Funding

HIV1 INHIBITION USING TAT PEPTIDE DERIVATIVESR01AI043894 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI KASHANCHI, FATAH · 1999 to 2015
$4.4M
CELL CYCLE REGULATED TRANSCRIPTION BY HIV1 TRANSACT TATR29AI044357 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI KASHANCHI, FATAH · 1998 to 2002
$322k
NIAID NIH HHS AI43894NIAID NIH HHS AI44357NIAID NIH HHS R01 AI043894NIAID NIH HHS R29 AI044357PHS HHS 13969
6 · The paper itself

Abstract

backgroundAdult T-cell leukemia (ATL) is a complex and multifaceted disease associated with human T-cell leukemia virus type 1 (HTLV-I) infection. Tax, the viral oncoprotein, is considered a major contributor to cell cycle deregulation in HTLV-I transformed cells by either directly disrupting cellular factors (protein-protein interactions) or altering their transcription profile. Tax transactivates these cellular promoters by interacting with transcription factors such as CREB/ATF, NF-kappaB, and SRF. Therefore by examining which factors upregulate a particular set of promoters we may begin to understand how Tax orchestrates leukemia development.

resultsWe observed that CTLL cells stably expressing wild-type Tax (CTLL/WT) exhibited aneuploidy as compared to a Tax clone deficient for CREB transactivation (CTLL/703). To better understand the contribution of Tax transactivation through the CREB/ATF pathway to the aneuploid phenotype, we performed microarray analysis comparing CTLL/WT to CTLL/703 cells. Promoter analysis of altered genes revealed that a subset of these genes contain CREB/ATF consensus sequences. While these genes had diverse functions, smaller subsets of genes were found to be involved in G2/M phase regulation, in particular kinetochore assembly. Furthermore, we confirmed the presence of CREB, Tax and RNA Polymerase II at the p97Vcp and Sgt1 promoters in vivo through chromatin immunoprecipitation in CTLL/WT cells.

conclusionThese results indicate that the development of aneuploidy in Tax-expressing cells may occur in response to an alteration in the transcription profile, in addition to direct protein interactions.

Indexed as

AneuploidyBinding SitesChromatin ImmunoprecipitationComputational BiologyCyclic AMP Response Element-Binding ProteinDNA Polymerase IIGene Expression ProfilingGene Expression RegulationGene Products, taxGenes, pXHumansHuman T-lymphotropic virus 1KinetochoresLeukemia, Prolymphocytic, T-CellOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticCREB1 protein, humanCyclic AMP Response Element-Binding ProteinDNA Polymerase IIGene Products, tax

Identifiers

PMID16822311
PMCPMC1553470
OpenAlexW2097413950

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.