Evidence map›Paper›PMID 16820530›Full record

ArticleNucleic acids research2006

Metabolic regulation of apoB mRNA editing is associated with phosphorylation of APOBEC-1 complementation factor.

David M Lehmann, Chad A Galloway, Mark P Sowden, Harold C Smith

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Functions and regulation of the APOBEC family of proteins.Seminars in cell & developmental biology · 2012
    Review
  8. Mouse and other rodent models of C to U RNA editing.Methods in molecular biology (Clifton, N.J.) · 2011
    Article
  9. Article
  10. APOBEC-1 complementation factor (ACF) forms RNA-dependent multimers.Biochemical and biophysical research communications · 2010
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. APOBEC-1-mediated RNA editing.Wiley interdisciplinary reviews. Systems biology and medicine
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

David M LehmannDepartment of Toxicology, University of Rochester, Rochester, NY 14642, USA.
Chad A Galloway
Mark P Sowden
Harold C Smith
University of Rochester · US

Funding

Training in Environment ToxicologyT32ES007026 · NIEHS · UNIVERSITY OF ROCHESTER · PI Alison Elder, Marissa Sobolewski Terry · 1985 to 2026
$20.2M
METABOLIC REGULATION OF APOLIPOPROTEIN B MRNA EDITINGR01DK043739 · NIDDK · UNIVERSITY OF ROCHESTER · PI SMITH, HAROLD C · 1992 to 2003
$1.1M
NIDDK NIH HHS DK43739NIDDK NIH HHS R01 DK043739NIEHS NIH HHS 5T32 ES07026NIEHS NIH HHS T32 ES007026
6 · The paper itself

Abstract

Apolipoprotein B (apoB) mRNA editing is a nuclear event that minimally requires the RNA substrate, APOBEC-1 and APOBEC-1 Complementation Factor (ACF). The co-localization of these macro-molecules within the nucleus and the modulation of hepatic apoB mRNA editing activity have been described following a variety of metabolic perturbations, but the mechanism that regulates editosome assembly is unknown. APOBEC-1 was effectively co-immunoprecipitated with ACF from nuclear, but not cytoplasmic extracts. Moreover, alkaline phosphatase treatment of nuclear extracts reduced the amount of APOBEC-1 co-immunoprecipitated with ACF and inhibited in vitro editing activity. Ethanol stimulated apoB mRNA editing was associated with a 2- to 3-fold increase in ACF phosphorylation relative to that in control primary hepatocytes. Significantly, phosphorylated ACF was restricted to nuclear extracts where it co-sedimented with 27S editing competent complexes. Two-dimensional phosphoamino acid analysis of ACF immunopurified from hepatocyte nuclear extracts demonstrated phosphorylation of serine residues that was increased by ethanol treatment. Inhibition of protein phosphatase I, but not PPIIA or IIB, stimulated apoB mRNA editing activity coincident with enhanced ACF phosphorylation in vivo. These data demonstrate that ACF is a metabolically regulated phosphoprotein and suggest that this post-translational modification increases hepatic apoB mRNA editing activity by enhancing ACF nuclear localization/retention, facilitating the interaction of ACF with APOBEC-1 and thereby increasing the probability of editosome assembly and activity.

Indexed as

RNA EditingAnimalsAPOBEC-1 DeaminaseApolipoproteins BCell LineCell NucleusCells, CulturedCytidine DeaminaseEnzyme InhibitorsHeterogeneous-Nuclear RibonucleoproteinsLiverMalePhosphoprotein PhosphatasesPhosphoproteinsPhosphorylationRatsAPOBEC-1 complementation factor, ratAPOBEC-1 DeaminaseApobec1 protein, ratApolipoproteins BCytidine DeaminaseEnzyme InhibitorsHeterogeneous-Nuclear RibonucleoproteinsPhosphoprotein PhosphatasesPhosphoproteinsRNA, Messenger

Identifiers

PMID16820530
PMCPMC1500872
OpenAlexW2099923187

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.