Evidence map›Paper›PMID 16820482›Full record

ArticleApplied and environmental microbiology2006

Structure, organization, and transcriptional regulation of a family of copper radical oxidase genes in the lignin-degrading basidiomycete Phanerochaete chrysosporium.

Amber Vanden Wymelenberg, Grzegorz Sabat, Michael Mozuch, Philip J Kersten, Dan Cullen, Robert A Blanchette

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. A Putative Lignin Copper Oxidase fromJournal of fungi (Basel, Switzerland) · 2021
    Article
  5. Article
  6. Article
  7. Fungal Treatment for the Valorization of Technical Soda Lignin.Journal of fungi (Basel, Switzerland) · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. The Algicidal FungusFrontiers in microbiology · 2018
    Article
  13. Glyoxal oxidases: their nature and properties.World journal of microbiology & biotechnology · 2017
    Review
  14. Metadata Analysis ofInternational journal of biological sciences · 2017
    Article
  15. Article
  16. Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Amber Vanden WymelenbergDepartment of Bacteriology, University of Wisconsin, Madison, Wisconsin 53706, USA.
Grzegorz Sabat
Michael Mozuch
Philip J Kersten
Dan Cullen
Robert A Blanchette
Forest Products Laboratory · USUniversity of Wisconsin–Madison · USUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The white rot basidiomycete Phanerochaete chrysosporium produces an array of nonspecific extracellular enzymes thought to be involved in lignin degradation, including lignin peroxidases, manganese peroxidases, and the H2O2-generating copper radical oxidase, glyoxal oxidase (GLX). Preliminary analysis of the P. chrysosporium draft genome had identified six sequences with significant similarity to GLX and designated cro1 through cro6. The predicted mature protein sequences diverge substantially from one another, but the residues coordinating copper and constituting the radical redox site are conserved. Transcript profiles, microscopic examination, and lignin analysis of inoculated thin wood sections are consistent with differential regulation as decay advances. The cro2-encoded protein was detected by liquid chromatography-tandem mass spectrometry in defined medium. The cro2 cDNA was successfully expressed in Aspergillus nidulans under the control of the A. niger glucoamylase promoter and secretion signal. The recombinant CRO2 protein had a substantially different substrate preference than GLX. The role of structurally and functionally diverse cro genes in lignocellulose degradation remains to be established.

Indexed as

Alcohol OxidoreductasesGene Expression Regulation, FungalMultigene FamilyTranscription, GeneticAspergillusBiodegradation, EnvironmentalCulture MediaFungal ProteinsLigninPhanerochaetePopulusRecombinant ProteinsAlcohol OxidoreductasesCulture MediaFungal Proteinsglyoxal oxidaseLigninRecombinant Proteins

Identifiers

PMID16820482
PMCPMC1489383
OpenAlexW2098356410

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.