Evidence map›Paper›PMID 16820092›Full record

ArticleNeoplasia (New York, N.Y.)2006

Three-color FISH analysis of TMPRSS2/ERG fusions in prostate cancer indicates that genomic microdeletion of chromosome 21 is associated with rearrangement.

Maisa Yoshimoto, Anthony M Joshua, Susan Chilton-Macneill, Jane Bayani, Shamini Selvarajah, Andrew J Evans, Maria Zielenska, Jeremy A Squire

Abstract read
In one paragraph

Article in Neoplasia (New York, N.Y.), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. The Genomics of Prostate Cancer: A Historic Perspective.Cold Spring Harbor perspectives in medicine · 2019
    Review
  11. Article
  12. Review
  13. Use of multicolor fluorescence in situ hybridization to detect deletions in clinical tissue sections.Laboratory investigation; a journal of technical methods and pathology · 2018
    Review
  14. Review
  15. Article
  16. FluorescenceThe journal of pathology. Clinical research · 2017
    Review
  17. Article
  18. CRISPR-Induced TMPRSS2-ERG Gene Fusions in Mouse Prostate Organoids.JSM biotechnology & biomedical engineering · 2017
    Article
  19. Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Maisa YoshimotoApplied Molecular Oncology, Ontario Cancer Institute, Princess Margaret Hospital, Toronto, Ontario, Canada.
Anthony M Joshua
Susan Chilton-Macneill
Jane Bayani
Shamini Selvarajah
Andrew J Evans
Maria Zielenska
Jeremy A Squire

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The recent description of novel recurrent gene fusions in approximately 80% of prostate cancer (PCa) cases has generated increased interest in the search for new translocations in other epithelial cancers and emphasizes the importance of understanding the origins and biologic implications of these genomic rearrangements. Analysis of 15 PCa cases by reverse transcription-polymerase chain reaction was used to detect six ERG-related gene fusion transcripts with TMPRSS2. No TMPRSS2/ETV1 chimeric fusion was detected in this series. Three-color fluorescence in situ hybridization confirms that TMPRSS2/ERG fusion may be accompanied by a small hemizygous sequence deletion on chromosome 21 between ERG and TMPRSS2 genes. Analysis of genomic architecture in the region of genomic rearrangement suggests that tracts of microhomology could facilitate TMPRSS2/ERG fusion events.

Indexed as

Chromosome AberrationsChromosomes, Human, Pair 21Gene DeletionDNA-Binding ProteinsHumansIn Situ Hybridization, FluorescenceMaleModels, GeneticOncogene Proteins, FusionProstatic NeoplasmsRecombinant Fusion ProteinsReverse Transcriptase Polymerase Chain ReactionSerine EndopeptidasesTrans-ActivatorsTranscriptional Regulator ERGDNA-Binding ProteinsERG protein, humanOncogene Proteins, FusionRecombinant Fusion ProteinsSerine EndopeptidasesTMPRSS2 protein, humanTrans-ActivatorsTranscriptional Regulator ERG

Identifiers

PMID16820092
PMCPMC1601467

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.