Evidence map›Paper›PMID 16819597›Full record

ArticleJournal of muscle research and cell motility2006

Diversity in transcriptional start site selection and alternative splicing affects the 5'-UTR of mouse striated muscle myosin transcripts.

Briana K Dennehey, Leslie A Leinwand, Kenneth S Krauter

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of muscle research and cell motility, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Intergenic bidirectional promoter and cooperative regulation of the IIx and IIb MHC genes in fast skeletal muscle.American journal of physiology. Regulatory, integrative and comparative physiology · 2008
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Briana K DenneheyDepartment of Molecular, Cellular and Developmental Biology, University of Colorado at Boulder, Boulder, CO 80309, USA.
Leslie A Leinwand
Kenneth S Krauter
University of Colorado System · USUniversity of Colorado Boulder · US

Funding

Twin StudyP60DA011015 · NIDA · UNIVERSITY OF COLORADO DENVER · PI HEWITT, JOHN K. · 1997 to 2013
$22.5M
MYOSIN GENE DIVERSITY AND FUNCTIONR01GM029090 · NIGMS · YESHIVA UNIVERSITY · PI Leslie Anne Leinwand · 1985 to 2026
$12.3M
GENETICS OF ADOLESCENT ANTISOCIAL DRUG DEPENDENCER01DA012845 · NIDA · UNIVERSITY OF COLORADO DENVER · PI HEWITT, JOHN K. · 2000 to 2012
$7.1M
Mediators of Cardiac AdaptationR01HL050560 · NHLBI · YESHIVA UNIVERSITY · PI LEINWAND, LESLIE ANNE · 1993 to 2011
$4.0M
IN VIVO MODELS OF CARDIAC GENE REGULATIONR37HL050560 · NHLBI · YESHIVA UNIVERSITY · PI LEINWAND, LESLIE ANNE · 1993 to 2002
$1.3M
Developmental Myosin Heavy Chain Regulation and FunctionR01AR048817 · NIAMS · UNIVERSITY OF COLORADO AT BOULDER · PI LEINWAND, LESLIE ANNE · 2002 to 2006
$1.1M
MECHANISMS OF CARDIOVASCULAR DISEASE AND GENE THERAPYT32HL007851 · NHLBI · UNIVERSITY OF COLORADO AT BOULDER · PI LEINWAND, LESLIE ANNE · 1996 to 2005
$1.1M
NHLBI NIH HHS HL007851NHLBI NIH HHS HL050560NHLBI NIH HHS T32 HL007851NIAMS NIH HHS AR048817NIDA NIH HHS P60 DA011015NIDA NIH HHS R01 DA012845NIGMS NIH HHS GM029090NIGMS NIH HHS R01 GM029090
6 · The paper itself

Abstract

We have analyzed nearly 2,000 myosin heavy chain gene (Myh) clones representing over 30 different transcripts from seven of eight striated muscle Myh genes expressed in mouse. We also report the transcriptional start sites (TSS) for the mouse developmental Myh genes. The data reveal a previously unknown diversity of TSSs and 5'-end alternative splicing in these transcripts. The cardiac Myh6 gene had two major TSSs. Use of the major downstream site led to an alternatively spliced second exon. Each of the other Myh genes had one major TATA-directed TSS and one or more minor alternative TSSs, some associated with alternative splicing. The minor transcripts were associated with polysomes and their spatial-temporal expression largely mirrored that of the major transcripts in wild-type, Myh1 null, Myh4 null, injured, and uninjured muscle, except that one form of Myh7, detected in heart, was not detected in diaphragm, and the ratio of the two major Myh6 transcripts varied in some circumstances. These findings indicate that alternative TSS usage and alternative splicing in the 5'-UTR are a general feature of murine Myh gene expression and that Myh gene regulation is more complex than previously appreciated.

Indexed as

Alternative SplicingGenetic VariationTranscription Initiation Site5' Untranslated RegionsAnimalsCell LineExonsGene Expression Regulation, DevelopmentalMiceMuscle, SkeletalMyoblastsMyosin Heavy ChainsTranscription, Genetic5' Untranslated RegionsMyosin Heavy Chains

Identifiers

PMID16819597
OpenAlexW2002174993

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.