Evidence map›Paper›PMID 16818885›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

IgD, like IgM, is a primordial immunoglobulin class perpetuated in most jawed vertebrates.

Yuko Ohta, Martin Flajnik

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 213 citations in OpenAlex.

  1. Characterization of immunoglobulin loci inNAR genomics and bioinformatics · 2026
    Article
  2. Adaptive Immunity in Marsupials.Journal of experimental zoology. Part A, Ecological and integrative physiology · 2026
    Review
  3. Article
  4. Article
  5. The unexpected role of nurse shark pancreas as a secondary lymphoid organ.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Article
  6. Article
  7. Review
  8. Review
  9. Teleost IgDiScience · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Immunoglobulins in teleosts.Immunogenetics · 2021
    Review
  16. The immunoglobulins of cartilaginous fishes.Developmental and comparative immunology · 2021
    Review
  17. Review
  18. Article
  19. Teleost IgDCell reports · 2019
    Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Yuko OhtaDepartment of Microbiology and Immunology, University of Maryland, 655 West Baltimore Street, Baltimore, MD 21201, USA. yota@som.umaryland.edu
Martin Flajnik
University of Maryland, Baltimore · US

Funding

EVOLUTION OF THE MAJOR HISTOCOMPATIBILITY COMPLEXR01RR006603 · NCRR · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F · 1991 to 2011
$3.4M
ONTOGENY AND PHYLOGENY OF THE MHCR01AI027877 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F · 1995 to 2009
$3.2M
ONTOGENY AND PHYLOGENY OF THE MHCR29AI027877 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F. · 1989 to 1993
–
NCRR NIH HHS R01 RR006603NCRR NIH HHS RR06603NIAID NIH HHS AI27877NIAID NIH HHS R01 AI027877
6 · The paper itself

Abstract

IgD has remained a mysterious Ig class and a bane to immunology students since its discovery >40 years ago. Its spotty occurrence in mammals and birds and the discovery of an isotype with similarities to IgD in bony fish are perplexing. We have identified IgD heavy (H) chain (delta) from the amphibian Xenopus tropicalis during examination of the IgH locus. The Xenopus delta gene is in the same position, immediately 3' of the IgM gene, as in mammals, and it is expressed only in the spleen at low levels, primarily as a transmembrane receptor by surface IgM(+) cells. Our data suggest that frog IgD is expressed on mature B cells, like in mouse/human. Unexpectedly, Xenopus IgD is orthologous to IgW, an Ig isotype found only in cartilaginous fish and lungfish, demonstrating that IgD/W, like IgM, was present in the ancestor of all living jawed vertebrates. In striking contrast to IgM, IgD/W is evolutionarily labile, showing many duplications/deletions of domains, the presence of multiple splice forms, existence as predominantly a secretory or transmembrane form, or loss of the entire gene in a species-specific manner. Our study suggests that IgD/W has played varied roles in different vertebrate taxa since the inception of the adaptive immune system, and it may have been preserved as a flexible locus over evolutionary time to complement steadfast IgM.

Indexed as

XenopusAmino Acid SequenceAnimalsEvolution, MolecularImmunoglobulin DImmunoglobulin delta-ChainsImmunoglobulin Heavy ChainsImmunoglobulin MImmunoglobulin mu-ChainsMolecular Sequence DataPhylogenyImmunoglobulin DImmunoglobulin delta-ChainsImmunoglobulin Heavy ChainsImmunoglobulin MImmunoglobulin mu-Chains

Identifiers

PMID16818885
PMCPMC1636022
OpenAlexW1978273011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.