Evidence map›Paper›PMID 16816363›Full record

ArticleThe American journal of pathology2006

Mining the acute respiratory distress syndrome proteome: identification of the insulin-like growth factor (IGF)/IGF-binding protein-3 pathway in acute lung injury.

Lynn M Schnapp, Samuel Donohoe, Jinzhi Chen, Donald A Sunde, Patricia M Kelly, John Ruzinski, Thomas Martin, David R Goodlett

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 2 pooled it
35.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 2 syntheses or guidelines pooled it, 204 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Lynn M SchnappDivision of Pulmonary and Critical Care Medicine, Harborview Medical Center, University of Washington, 325 9th Ave., Box 359640, Seattle, WA 98104, USA. lschnapp@u.washington.edu
Samuel Donohoe
Jinzhi Chen
Donald A Sunde
Patricia M Kelly
John Ruzinski
Thomas Martin
David R Goodlett
Harborview Medical Center · USUniversity of Washington · USInstitute for Systems Biology · USVA Puget Sound Health Care System · US

Funding

Variation in Human Innate ImmunityU54AI057141 · NIAID · UNIVERSITY OF WASHINGTON · PI WURFEL, MARTIN M. · 2003 to 2013
$102.3M
XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI CATHERINE J KARR · 1995 to 2026
$42.5M
SCCOR in Translational Research in Acute Lung InjuryP50HL073996 · NHLBI · UNIVERSITY OF WASHINGTON · PI MARTIN, THOMAS R · 2003 to 2007
$15.7M
Proteomics-based approach to ARDSR01HL073028 · NHLBI · UNIVERSITY OF WASHINGTON · PI SCHNAPP, LYNN M · 2003 to 2004
$262k
NHLBI PROTEOMICS INITIATIVE-268028179N01HV028179 · HV · INSTITUTE FOR SYSTEMS BIOLOGY · 2002 to 2002
–
NHLBI NIH HHS N01 HV028179NHLBI NIH HHS N01-HV-28179NHLBI NIH HHS P50 HL073996NHLBI NIH HHS R01 HL073028NHLBI NIH HHS R01 HL73028NIAID NIH HHS 1U54AI57141-01NIAID NIH HHS U54 AI057141NIEHS NIH HHS 5P30ES007033-10NIEHS NIH HHS P30 ES007033
6 · The paper itself

Abstract

To obtain a more complete protein profile of the airspace milieu in acute respiratory distress syndrome (ARDS) and to identify new mediators, we analyzed bronchoalveolar lavage fluid (BALF) by shotgun proteomics. Using BALF from three patients, we identified a total of 870 different proteins, a nearly 10-fold increase from previous reports. Among the proteins identified were known markers of lung injury, such as surfactant, proteases, and serum proteins. We also identified several biologically interesting proteins not previously identified in patients with ARDS, including insulin-like growth factor-binding protein-3 (IGFBP-3). Because of the known role of IGFBP-3 in regulating cell survival, we measured IGFBP-3 levels by enzyme-linked immunosorbent assay in ARDS BALF. Normal controls had low levels of IGFBP-3, whereas patients with early ARDS had a significant increase in IGFBP-3. The IGF pathway, acting through the type 1 IGF-receptor, repressed apoptosis of lung fibroblasts but not lung epithelial cells. Furthermore, depletion of IGF in ARDS BALF led to enhanced fibroblast apoptosis. Our data suggest that the IGFBP-3/IGF pathway is involved in the pathogenesis of lung injury, illustrating the power of shotgun proteomics to catalog proteins present in complex biological fluids, such as BALF, from which hypotheses can be developed and tested.

Indexed as

Protein Array AnalysisAdultApoptosisBlotting, WesternBronchoalveolar Lavage FluidEnzyme-Linked Immunosorbent AssayEpithelial CellsFemaleFibroblastsHumansInsulin-Like Growth Factor Binding Protein 3LungLung InjuryMaleMiddle AgedProteomeInsulin-Like Growth Factor Binding Protein 3ProteomeSomatomedins

Identifiers

PMID16816363
PMCPMC1698774
OpenAlexW2085314527

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.