Evidence map›Paper›PMID 16816192›Full record

ArticleJournal of bacteriology2006

Constitutive activation of two-component response regulators: characterization of VirG activation in Agrobacterium tumefaciens.

Rong Gao, Aindrila Mukhopadhyay, Fang Fang, David G Lynn

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Rong GaoCenter for Fundamental and Applied Molecular Evolution, Department of Chemistry, Emory University, 1515 Dickey Drive, Atlanta, GA 30322, USA.
Aindrila Mukhopadhyay
Fang Fang
David G Lynn
Emory University · US

Funding

CHEMICAL &GENETIC APPROACHES TO DEFINE CELL ACTIVATIONR01GM047369 · NIGMS · UNIVERSITY OF CHICAGO · PI LYNN, DAVID GILBERT · 1992 to 2005
$1.9M
NIGMS NIH HHS GM47369NIGMS NIH HHS R01 GM047369
6 · The paper itself

Abstract

Response regulators are the ultimate modulators in two-component signal transduction pathways. The N-terminal receiver domains generally accept phosphates from cognate histidine kinases to control output. VirG for example, the response regulator of the VirA/VirG two-component system in Agrobacterium tumefaciens, mediates the expression of virulence genes in response to plant host signals. Response regulators have a highly conserved structure and share a similar conformational activation upon phosphorylation, yet the sequence and structural features that determine or perturb the cooperative activation events are ill defined. Here we use VirG and the unique features of the Agrobacterium system to extend our understanding of the response regulator activation. Two previously isolated constitutive VirG mutants, VirGN54D and VirGI77V/D52E, provide the foundation for our studies. In vivo phosphorylation patterns establish that VirGN54D is able to accumulate phosphates from small-molecule phosphate donors, such as acetyl phosphate, while the VirGI77V/D52E allele carries conformational changes mimicking the active conformation. Further structural alterations on these two alleles begin to reveal the changes necessary for response regulator activation.

Indexed as

Agrobacterium tumefaciensBacterial ProteinsBase SequenceConserved SequenceDNA PrimersGene Expression Regulation, BacterialIntracellular Signaling Peptides and ProteinsModels, MolecularMutagenesis, Site-DirectedPhosphorylationPlantsPlasmidsProtein ConformationVirulenceBacterial ProteinsDNA PrimersIntracellular Signaling Peptides and Proteins

Identifiers

PMID16816192
PMCPMC1539974
OpenAlexW2130413620

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.