Evidence map›Paper›PMID 16810524›Full record

ArticlePlant cell reports2006

Sequence stability of the T-DNA - plant junctions in tissue culture in Arabidopsis transgenic lines.

Nina Papazova, Pieter Windels, Ann Depicker, Isabel Taverniers, Isabel Roldan-Ruiz, Anne Milcamps, Erik Van Bockstaele, Guy Van Den Eede, Marc De Loose

Abstract read
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In one paragraph

Article in Plant cell reports, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Nina PapazovaUnit Technology and Food, Institute for Agricultural and Fisheries Research, 9820, Merelbeke, Belgium. nina.papazova@ilvo.vlaanderen.be
Pieter Windels
Ann Depicker
Isabel Taverniers
Isabel Roldan-Ruiz
Anne Milcamps
Erik Van Bockstaele
Guy Van Den Eede
Marc De Loose
Ghent University · BEInstituut voor Landbouw en Visserijonderzoek · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The stability of the inserted transgenes and particularly the junction regions of transgenic events is a concern of food labeling, traceability and post release monitoring, as these regions are used for development of event-specific DNA-based detection methods. During the standard agricultural breeding practices, the transgenic lines can be exposed to completely different conditions than those in the laboratory environment. Some of these conditions have the potential to affect the stability of the transgenic locus and the surrounding DNA. As tissue culture is recognized as a stressful and mutagenic factor, we have analyzed the effect of this process on the stability of the junction regions at nucleotide level in five Arabidopsis thaliana transgenic lines in comparison with the respective integration loci in ColO and C24 ecotypes. No indication of any kind of alteration at nucleotide level of the junctions was found. The relevance of the stability of the plant-T-DNA junction regions for application of the DNA-based methods in commercial transgenic plants is discussed.

Indexed as

ArabidopsisBase SequenceDNA, BacterialDNA, PlantPlants, Genetically ModifiedSequence Analysis, DNATissue Culture TechniquesDNA, BacterialDNA, PlantT-DNA

Identifiers

PMID16810524
OpenAlexW2013537445

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.