Evidence map›Paper›PMID 16801682›Full record

ArticleMolecular biology of the cell2006

The phosphoinositide kinase PIKfyve/Fab1p regulates terminal lysosome maturation in Caenorhabditis elegans.

Anne-Sophie Nicot, Hanna Fares, Bernard Payrastre, Andrew D Chisholm, Michel Labouesse, Jocelyn Laporte

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 132 citations in OpenAlex.

  1. Article
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  8. Article
  9. Regulation of phosphoinositide metabolism in Apicomplexan parasites.Frontiers in cell and developmental biology · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Lysosome biogenesis: Regulation and functions.The Journal of cell biology · 2021
    Review
  17. Loss of PIKfyve Causes Transdifferentiation ofFrontiers in cell and developmental biology · 2021
    Article
  18. Article
  19. Lysosomal size matters.Traffic (Copenhagen, Denmark) · 2020
    Review
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Anne-Sophie NicotDepartment of Molecular Pathology, Institut National de la Santé et de la Recherche Médicale U596, Centre National de la Recherche Scientifique Unité Mixte de Recherche 7104, Université Louis Pasteur de Strasbourg, Illkirch, France.
Hanna Fares
Bernard Payrastre
Andrew D Chisholm
Michel Labouesse
Jocelyn Laporte
Centre de Physiopathologie de Toulouse-Purpan · FRCollège de France · FRUniversity of Arizona · USUniversity of California, Santa Cruz · US

Funding

Mechanisms of Tissue Morphogenesis in C. elegansR01GM054657 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI CHISHOLM, ANDREW D · 1997 to 2018
$5.8M
Analysis of endocytosis in Caenorhabditis elegansR01GM065235 · NIGMS · UNIVERSITY OF ARIZONA · PI FARES, HANNA F · 2002 to 2006
$1.1M
NIGMS NIH HHS GM-54657NIGMS NIH HHS GM-65235NIGMS NIH HHS R01 GM054657NIGMS NIH HHS R01 GM065235
6 · The paper itself

Abstract

Membrane dynamics is necessary for cell homeostasis and signal transduction and is in part regulated by phosphoinositides. Pikfyve/Fab1p is a phosphoinositide kinase that phosphorylates phosphatidylinositol 3-monophosphate into phosphatidylinositol-3,5-bisphosphate [PtdIns(3,5)P2] and is implicated in membrane homeostasis in yeast and in mammalian cells. These two phosphoinositides are substrates of myotubularin phosphatases found mutated in neuromuscular diseases. We studied the roles of phosphatidylinositol phosphate kinase 3 (PPK-3), the orthologue of PIKfyve/Fab1p, in a multicellular organism, Caenorhabditis elegans. Complete loss of ppk-3 function induces developmental defects characterized by embryonic lethality, whereas partial loss of function leads to growth retardation. At the cellular level, ppk-3 mutants display a striking enlargement of vacuoles positive for lysosome-associated membrane protein 1 in different tissues. In the intestine, RAB-7-positive late endosomes are also enlarged. Membranes of the enlarged lysosomes originate at least in part from smaller lysosomes, and functional and genetic analyses show that the terminal maturation of lysosomes is defective. Protein degradation is not affected in the hypomorphic ppk-3 mutant and is thus uncoupled from membrane retrieval. We measured the level of PtdIns(3,5)P2 and showed that its production is impaired in this mutant. This work strongly suggests that the main function of PPK-3 is to mediate membrane retrieval from matured lysosomes through regulation of PtdIns(3,5)P2.

Indexed as

Amino Acid SequenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsIntracellular MembranesLysosomesMolecular Sequence DataMutationPhosphatidylinositol PhosphatesPhosphotransferases (Alcohol Group Acceptor)VacuolesCaenorhabditis elegans Proteinsphosphatidylinositol 3,5-diphosphatePhosphatidylinositol PhosphatesPhosphotransferases (Alcohol Group Acceptor)PPK-3 protein, C elegans

Identifiers

PMID16801682
PMCPMC1483040
OpenAlexW2161476009

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.