Evidence map›Paper›PMID 16796525›Full record

ArticleAIDS research and human retroviruses2006

Longitudinal assessment of de novo T cell production in relation to HIV-associated T cell homeostasis failure.

Pratip K Chattopadhyay, Daniel C Douek, Stephen J Gange, Karen R Chadwick, Marc Hellerstein, Joseph B Margolick

Abstract readMulticenter Study
In one paragraph

Article in AIDS research and human retroviruses, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Trial
  2. Article
  3. Brief Report: Role of Thymic Reconstitution in the Outcome of AIDS-Related PML.Journal of acquired immune deficiency syndromes (1999) · 2015
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Good cell, bad cell: flow cytometry reveals T-cell subsets important in HIV disease.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2010
    Review
  12. Correlation of immune activation with HIV-1 RNA levels assayed by real-time RT-PCR in HIV-1 subtype C infected patients in Northern India.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Pratip K ChattopadhyayVaccine Research Center, National Institute of Allergy and Infectious Diseases, Bethesda, Maryland 20892, USA.
Daniel C Douek
Stephen J Gange
Karen R Chadwick
Marc Hellerstein
Joseph B Margolick

Funding

NATURAL HISTORY OF AIDS IN HOMOSEXUAL MENU01AI035040 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DETELS, ROGER, MARTINEZ-MAZA, OTONIEL · 1993 to 2018
$75.2M
University of Pittsburgh Multicenter AIDS Cohort Study (MACS)U01AI035041 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARTINSON, JEREMY JAMES, RINALDO, CHARLES R · 1993 to 2018
$71.4M
MULTICENTER AIDS COHORT STUDYU01AI035039 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI WOLINSKY, STEVEN M · 1993 to 2018
$66.4M
Multicenter Aids Cohort Study- Part B (Baltimore Site)U01AI035042 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BROWN, TODD T, MARGOLICK, JOSEPH B. · 1993 to 2018
$61.5M
ZINC AND CA EDTA THERAPY OF PLUMBISMM01RR000052 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BELCHER, HAROLYN MILLICENT EDITH · 1985 to 2007
$37.3M
METHODOLOGICAL EXPERTISE IN INTREPRETING MACS DATAU01AI035043 · NIAID · JOHNS HOPKINS UNIVERSITY · PI JACOBSON, LISA P · 1993 to 2011
$26.9M
Center for the Analysis & Management of the Multicenter AIDS Cohort StudyUM1AI035043 · NIAID · JOHNS HOPKINS UNIVERSITY · PI D'SOUZA, GYPSYAMBER, JACOBSON, LISA P · 2012 to 2018
$20.7M
NATURAL HISTORY OF HIV INFECTION IN INJECTION DRUG USERSR37DA004334 · NIDA · JOHNS HOPKINS UNIVERSITY · PI KIRK, GREGORY D · 1997 to 2006
$9.0M
JOHNS HOPKINS CENTER FOR AIDS RESEARCHP30AI042855 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BARTLETT, JOHN G · 2000 to 2005
$7.7M
THE NATURAL HISTORY OF HIV INFECTION AMONG DRUG USERSR01DA004334 · NIDA · JOHNS HOPKINS UNIVERSITY · PI KIRK, GREGORY D · 1987 to 2011
$7.6M
Testing in vivo of HIV-immunopathogenic hypotheses using new kinetic techniquesR37AI043866 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HELLERSTEIN, MARC KOPEL · 2003 to 2012
$3.9M
Natural History of HIV Infection In Injection Drug UsersR56DA004334 · NIDA · JOHNS HOPKINS UNIVERSITY · PI KIRK, GREGORY D · 2012 to 2013
$3.2M
Intramural NIH HHS Z99 AI999999NCRR NIH HHS M01 RR000052NCRR NIH HHS M01-RR00052NIAID NIH HHS AI 35039NIAID NIH HHS AI 35040NIAID NIH HHS AI 35041NIAID NIH HHS AI 35042NIAID NIH HHS AI 35043NIAID NIH HHS AI 37984NIAID NIH HHS AI 41401NIAID NIH HHS AI 42532NIAID NIH HHS AI 42855NIAID NIH HHS AI 43866NIAID NIH HHS P30 AI042855NIAID NIH HHS R01 AI041401NIAID NIH HHS R01 AI042532NIAID NIH HHS R01 AI043866NIAID NIH HHS R37 AI043866NIAID NIH HHS R56 AI042532NIAID NIH HHS U01 AI035039NIAID NIH HHS U01 AI035040NIAID NIH HHS U01 AI035041NIAID NIH HHS U01 AI035042NIAID NIH HHS U01 AI037984NIDA NIH HHS DA 04334NIDA NIH HHS R01 DA004334NIDA NIH HHS R37 DA004334NIDA NIH HHS R56 DA004334
6 · The paper itself

Abstract

Loss of circulating CD4+ T cells in HIV-1 disease is balanced by CD8+ lymphocytosis to maintain normal CD3+ T cell counts [blind T cell homeostasis (TCH)]. However, for unknown reasons TCH generally fails 1.5-2.5 years before clinically defined AIDS. We investigated whether TCH failure was associated with changes in thymic production of T cells. Using specimens stored prospectively in the Multicenter AIDS Cohort Study (MACS), we measured expression of signal-joint T cell receptor excision circles (sjTRECs), a marker for thymic T cell production, and the fraction of proliferating naive and memory T cells during a 6-8 year period bracketing TCH failure. Segmented regression modeling assessed (1) rates of change in TREC levels before and after TCH failure, and (2) whether these were affected by cellular proliferation, which may dilute sjTREC levels. TCH failure was associated with a large decline in sjTREC (median 1109-fold, p = 0.028); the rate of this decline was only slightly affected when increased proliferation of naive T cells or other peripheral lymphocytes was taken into account. Preferential loss of naive CD4+ T cells was also noted before TCH failure, as has been seen in other studies. These results suggest that deficits in de novo T cell production, either through the decline of thymic function or the destruction of naive T cells, are likely to play an important role in TCH failure and progression of HIV-1 disease.

Indexed as

CD3 ComplexCohort StudiesHIV-1HIV InfectionsHomeostasisHumansImmunologic MemoryLymphocyte ActivationMaleReceptors, Antigen, T-CellThymus GlandTime FactorsT-LymphocytesCD3 ComplexReceptors, Antigen, T-Cell

Identifiers

PMID16796525
PMCPMC2365916

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.