Evidence map›Paper›PMID 16793922›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Identification of a Hoxc8-regulated transcriptional network in mouse embryo fibroblast cells.

Haiyan Lei, Aster H Juan, Moo-Sang Kim, Frank H Ruddle

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
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  4. Viral remodeling of the 4D nucleome.Experimental & molecular medicine · 2024
    Review
  5. Association ofGenes · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Haiyan LeiDepartment of Molecular, Cellular and Developmental Biology, Yale University, 266 Whitney Avenue, New Haven, CT 06511.
Aster H JuanDepartment of Molecular, Cellular and Developmental Biology, Yale University, 266 Whitney Avenue, New Haven, CT 06511.
Moo-Sang KimDepartment of Molecular, Cellular and Developmental Biology, Yale University, 266 Whitney Avenue, New Haven, CT 06511.
Frank H RuddleDepartment of Molecular, Cellular and Developmental Biology, Yale University, 266 Whitney Avenue, New Haven, CT 06511 frank.ruddle@yale.edu.

Funding

GENETIC ANALYSIS OF SOMATIC CELL POPULATIONR01GM009966 · NIGMS · YALE UNIVERSITY · PI RUDDLE, FRANK H · 1985 to 2006
$2.2M
GENETIC ANALYSIS OF SOMATIC CELL POPULATIONR37GM009966 · NIGMS · YALE UNIVERSITY · PI RUDDLE, FRANK H · 1990 to 1994
–
NIGMS NIH HHS GM09966NIGMS NIH HHS R01 GM009966
6 · The paper itself

Abstract

The transcription factor, Hoxc8, is a member of the homeobox gene family that is vital for growth and differentiation. Previously, we identified 34 genes whose expression levels were changed at least 2-fold by forced expression of Hoxc8 in C57BL/6J mouse embryo fibroblast cells using a mouse 16,463-gene oligonucleotide microarray. In the present study, we used the combined power of microarray profiling, global Hoxc8 DNA-binding site analysis, and high-throughput chromatin immunoprecipitation assays to identify direct and biologically relevant targets of Hoxc8 in vivo. Here we show that 19 of the 34 responsive genes contain Hoxc8 consensus DNA-binding sequence(s) in their regulatory regions. Chromatin immunoprecipitation analysis indicated that Hoxc8-DNA interaction was detected in five of the 19 candidate genes. All of these five target genes have been implicated in oncogenesis, cell adhesion, proliferation, and apoptosis. Overall, the genes described here should aid in the understanding of global regulatory networks of Hox genes and to provide valuable insight into the molecular basis of Hoxc8 in development and carcinogenesis.

Indexed as

Gene Expression Regulation, DevelopmentalTranscription, Genetic5' Flanking RegionAnimalsBase SequenceCell DifferentiationCells, CulturedDNAEmbryo, MammalianFibroblastsGenes, RegulatorHomeodomain ProteinsHumansMiceDNAHomeodomain ProteinsHoxc8 protein, mouse

Identifiers

PMID16793922
PMCPMC1502453

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.