Evidence map›Paper›PMID 16790772›Full record

ArticleInfection and immunity2006

Search for Bacillus anthracis potential vaccine candidates by a functional genomic-serologic screen.

Orit Gat, Haim Grosfeld, Naomi Ariel, Itzhak Inbar, Galia Zaide, Yehoshua Broder, Anat Zvi, Theodor Chitlaru, Zeev Altboum, Dana Stein and 2 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Infection and immunity, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Article
  3. TheMicroorganisms · 2020
    Review
  4. A new structural class of bacterial thioester domains reveals a slipknot topology.Protein science : a publication of the Protein Society · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. An update on the transport and metabolism of iron in Listeria monocytogenes: the role of proteins involved in pathogenicity.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2015
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Plasmodium immunomics.International journal for parasitology · 2011
    Review
  15. Article
  16. Article
  17. The adenylyl cyclase activity of anthrax edema factor.Molecular aspects of medicine · 2009
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Orit GatIsrael Institute for Biological Research, P.O. Box 19, Ness Ziona 74100, Israel. avigdor@iibr.gov.il
Haim Grosfeld
Naomi Ariel
Itzhak Inbar
Galia Zaide
Yehoshua Broder
Anat Zvi
Theodor Chitlaru
Zeev Altboum
Dana Stein
Sara Cohen
Avigdor Shafferman
Israel Institute for Biological Research · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus anthracis proteins that possess antigenic properties and are able to evoke an immune response were identified by a reductive genomic-serologic screen of a set of in silico-preselected open reading frames (ORFs). The screen included in vitro expression of the selected ORFs by coupled transcription and translation of linear PCR-generated DNA fragments, followed by immunoprecipitation with antisera from B. anthracis-infected animals. Of the 197 selected ORFs, 161 were chromosomal and 36 were on plasmids pXO1 and pXO2, and 138 of the 197 ORFs had putative functional annotations (known ORFs) and 59 had no assigned functions (unknown ORFs). A total of 129 of the known ORFs (93%) could be expressed, whereas only 38 (64%) of the unknown ORFs were successfully expressed. All 167 expressed polypeptides were subjected to immunoprecipitation with the anti-B. anthracis antisera, which revealed 52 seroreactive immunogens, only 1 of which was encoded by an unknown ORF. The high percentage of seroreactive ORFs among the functionally annotated ORFs (37%; 51/129) attests to the predictive value of the bioinformatic strategy used for vaccine candidate selection. Furthermore, the experimental findings suggest that surface-anchored proteins and adhesins or transporters, such as cell wall hydrolases, proteins involved in iron acquisition, and amino acid and oligopeptide transporters, have great potential to be immunogenic. Most of the seroreactive ORFs that were tested as DNA vaccines indeed appeared to induce a humoral response in mice. We list more than 30 novel B. anthracis immunoreactive virulence-related proteins which could be useful in diagnosis, pathogenesis studies, and future anthrax vaccine development.

Indexed as

GenomicsAnimalsAnthraxAnthrax VaccinesAntigens, BacterialBacillus anthracisChromosomes, BacterialComputational BiologyGenome, BacterialGuinea PigsImmune SeraMiceMice, Inbred ICROpen Reading FramesRabbitsVaccines, DNAAnthrax VaccinesAntigens, BacterialImmune SeraVaccines, DNA

Identifiers

PMID16790772
PMCPMC1489694
OpenAlexW2110578206

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.