ArticleBMC bioinformatics2006
Web-based analysis of the mouse transcriptome using Genevestigator.
Article in BMC bioinformatics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
16 citing papers in PubMed.
- Prediction of co-expression genes and integrative analysis of gene microarray and proteomics profile of Keshan disease.Scientific reports · 2018Article
- Sulfated Cholecystokinin-8 Promotes CD36-Mediated Fatty Acid Uptake into Primary Mouse Duodenal Enterocytes.Frontiers in physiology · 2017Article
- Article
- Expression of phosphodiesterase 6 (PDE6) in human breast cancer cells.SpringerPlus · 2013Article
- Nature of bacterial colonization influences transcription of mucin genes in mice during the first week of life.BMC research notes · 2012Article
- Identification of biotic and abiotic stress up-regulated ESTs in Gossypium arboreum.Molecular biology reports · 2012Article
- Web-based multi-center data management system for clinical neuroscience research.Journal of medical systems · 2010Article
- 'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it.The Biochemical journal · 2009Review
- Article
- Early genomic responses to salicylic acid in Arabidopsis.Plant molecular biology · 2009Article
- Meta Analysis of Gene Expression Data within and Across Species.Current genomics · 2008Article
- Functional analysis of Arabidopsis postprenylation CaaX processing enzymes and their function in subcellular protein targeting.Plant physiology · 2008Article
- Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes.Advances in bioinformatics · 2008Article
- Localization of sucrose synthase in developing seed and siliques of Arabidopsis thaliana reveals diverse roles for SUS during development.Journal of experimental botany · 2008Article
- Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos.Nucleic acids research · 2007Article
- Genevestigator. Facilitating web-based gene-expression analysis.Plant physiology · 2006Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundGene function analysis often requires a complex and laborious sequence of laboratory and computer-based experiments. Choosing an effective experimental design generally results from hypotheses derived from prior knowledge or experimentation. Knowledge obtained from meta-analyzing compendia of expression data with annotation libraries can provide significant clues in understanding gene and network function, resulting in better hypotheses that can be tested in the laboratory. DESCRIPTION: Genevestigator is a microarray database and analysis system allowing context-driven queries. Simple but powerful tools allow biologists with little computational background to retrieve information about when, where and how genes are expressed. We manually curated and quality-controlled 3110 mouse Affymetrix arrays from public repositories. Data queries can be run against an annotation library comprising 160 anatomy categories, 12 developmental stage groups, 80 stimuli, and 182 genetic backgrounds or modifications. The quality of results obtained through Genevestigator is illustrated by a number of biological scenarios that are substantiated by other types of experimentation in the literature.
conclusionThe Genevestigator-Mouse database effectively provides biologically meaningful results and can be accessed at https://www.genevestigator.ethz.ch.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.